gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 654 |
| AclWI | GGATC | 3 cut(s) | 381, 547, 1111 |
| AcuI | CTGAAG | 6 cut(s) | 262, 522, 767, 895, 945, 1071 |
| AdeI | CACNNNGTG | 1 cut(s) | 761 |
| AflIII | ACRYGT | 1 cut(s) | 324 |
| AgsI | TTSAA | 8 cut(s) | 94, 252, 389, 413, 620, 841, 900, 989 |
| AhlI | ACTAGT | 1 cut(s) | 779 |
| AjnI | CCWGG | 1 cut(s) | 1099 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 929, 961 |
| AluBI | AGCT | 7 cut(s) | 128, 148, 282, 500, 586, 680, 882 |
| AluI | AGCT | 7 cut(s) | 128, 148, 282, 500, 586, 680, 882 |
| Alw21I | GWGCWC | 2 cut(s) | 74, 755 |
| Alw44I | GTGCAC | 1 cut(s) | 751 |
| AlwI | GGATC | 3 cut(s) | 381, 547, 1111 |
| AoxI | GGCC | 2 cut(s) | 737, 787 |
| ApaLI | GTGCAC | 1 cut(s) | 751 |
| ApeKI | GCWGC | 3 cut(s) | 347, 692, 867 |
| AsuHPI | GGTGA | 1 cut(s) | 655 |
| BaeGI | GKGCMC | 1 cut(s) | 755 |
| BanII | GRGCYC | 1 cut(s) | 581 |
| Bbv12I | GWGCWC | 2 cut(s) | 74, 755 |
| BbvI | GCAGC | 3 cut(s) | 359, 679, 879 |
| BccI | CCATC | 1 cut(s) | 41 |
| BciT130I | CCWGG | 1 cut(s) | 1101 |
| BcuI | ACTAGT | 1 cut(s) | 779 |
| BfaI | CTAG | 3 cut(s) | 125, 681, 780 |
| BglII | AGATCT | 1 cut(s) | 553 |
| BisI | GCNGC | 3 cut(s) | 348, 693, 868 |
| BlsI | GCNGC | 3 cut(s) | 349, 694, 869 |
| Bme1390I | CCNGG | 1 cut(s) | 1101 |
| BmiI | GGNNCC | 1 cut(s) | 258 |
| BmrFI | CCNGG | 1 cut(s) | 1101 |
| BmsI | GCATC | 3 cut(s) | 172, 466, 826 |
| BpmI | CTGGAG | 1 cut(s) | 687 |
| Bpu10I | CCTNAGC | 1 cut(s) | 582 |
| BsaAI | YACGTR | 1 cut(s) | 981 |
| BsaBI | GATNNNNATC | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 1 cut(s) | 104 |
| Bse1I | ACTGG | 2 cut(s) | 231, 660 |
| Bse3DI | GCAATG | 1 cut(s) | 1021 |
| Bse8I | GATNNNNATC | 1 cut(s) | 51 |
| BseBI | CCWGG | 1 cut(s) | 1101 |
| BseDI | CCNNGG | 1 cut(s) | 104 |
| BseGI | GGATG | 2 cut(s) | 174, 817 |
| BseJI | GATNNNNATC | 1 cut(s) | 51 |
| BseMI | GCAATG | 1 cut(s) | 1021 |
| BseMII | CTCAG | 3 cut(s) | 87, 163, 573 |
| BseNI | ACTGG | 2 cut(s) | 231, 660 |
| BseRI | GAGGAG | 1 cut(s) | 1106 |
| BseSI | GKGCMC | 1 cut(s) | 755 |
| BseXI | GCAGC | 3 cut(s) | 359, 679, 879 |
| BshFI | GGCC | 2 cut(s) | 739, 789 |
| BsiHKAI | GWGCWC | 2 cut(s) | 74, 755 |
| BsmI | GAATGC | 1 cut(s) | 870 |
| BsnI | GGCC | 2 cut(s) | 739, 789 |
| Bsp1286I | GDGCHC | 3 cut(s) | 74, 581, 755 |
| Bsp143I | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| BspANI | GGCC | 2 cut(s) | 739, 789 |
| BspCNI | CTCAG | 3 cut(s) | 86, 162, 574 |
| BspLI | GGNNCC | 1 cut(s) | 258 |
| BspPI | GGATC | 3 cut(s) | 381, 547, 1111 |
| BsrDI | GCAATG | 1 cut(s) | 1021 |
| BsrI | ACTGG | 2 cut(s) | 231, 660 |
| BssECI | CCNNGG | 1 cut(s) | 104 |
| BssMI | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| Bst2UI | CCWGG | 1 cut(s) | 1101 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 692 |
| BstBAI | YACGTR | 1 cut(s) | 981 |
| BstC8I | GCNNGC | 1 cut(s) | 528 |
| BstDEI | CTNAG | 4 cut(s) | 73, 149, 582, 834 |
| BstF5I | GGATG | 2 cut(s) | 174, 817 |
| BstKTI | GATC | 5 cut(s) | 143, 376, 542, 556, 1106 |
| BstMBI | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 692 |
| BstNI | CCWGG | 1 cut(s) | 1101 |
| BstNSI | RCATGY | 1 cut(s) | 328 |
| BstSCI | CCNGG | 1 cut(s) | 1099 |
| BstSLI | GKGCMC | 1 cut(s) | 755 |
| BstSNI | TACGTA | 1 cut(s) | 981 |
| BstV1I | GCAGC | 3 cut(s) | 359, 679, 879 |
| BstX2I | RGATCY | 3 cut(s) | 373, 539, 553 |
| BstYI | RGATCY | 3 cut(s) | 373, 539, 553 |
| BsuRI | GGCC | 2 cut(s) | 739, 789 |
| BtsCI | GGATG | 2 cut(s) | 174, 817 |
| BtsIMutI | CAGTG | 3 cut(s) | 81, 471, 667 |
| Cac8I | GCNNGC | 1 cut(s) | 528 |
| CviAII | CATG | 3 cut(s) | 237, 325, 943 |
| DdeI | CTNAG | 4 cut(s) | 73, 149, 582, 834 |
| DpnI | GATC | 5 cut(s) | 142, 375, 541, 555, 1105 |
| DpnII | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| DraIII | CACNNNGTG | 1 cut(s) | 761 |
| Eco105I | TACGTA | 1 cut(s) | 981 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco24I | GRGCYC | 1 cut(s) | 581 |
| Eco57I | CTGAAG | 6 cut(s) | 262, 522, 767, 895, 945, 1071 |
| EcoRII | CCWGG | 1 cut(s) | 1099 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| EcoT38I | GRGCYC | 1 cut(s) | 581 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaeI | CATG | 3 cut(s) | 240, 328, 946 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 893, 925 |
| FatI | CATG | 3 cut(s) | 236, 324, 942 |
| FblI | GTMKAC | 1 cut(s) | 654 |
| Fnu4HI | GCNGC | 3 cut(s) | 348, 693, 868 |
| FokI | GGATG | 2 cut(s) | 161, 804 |
| FriOI | GRGCYC | 1 cut(s) | 581 |
| Fsp4HI | GCNGC | 3 cut(s) | 348, 693, 868 |
| FspBI | CTAG | 3 cut(s) | 125, 681, 780 |
| GluI | GCNGC | 3 cut(s) | 348, 693, 868 |
| GsuI | CTGGAG | 1 cut(s) | 687 |
| HaeIII | GGCC | 2 cut(s) | 739, 789 |
| Hin1II | CATG | 3 cut(s) | 240, 328, 946 |
| HinfI | GANTC | 5 cut(s) | 52, 114, 290, 385, 856 |
| HphI | GGTGA | 1 cut(s) | 655 |
| Hpy166II | GTNNAC | 5 cut(s) | 597, 638, 655, 753, 764 |
| Hpy188I | TCNGA | 8 cut(s) | 196, 289, 544, 676, 747, 876, 925, 1090 |
| Hpy188III | TCNNGA | 3 cut(s) | 111, 297, 821 |
| Hpy8I | GTNNAC | 5 cut(s) | 597, 638, 655, 753, 764 |
| HpyAV | CCTTC | 3 cut(s) | 8, 110, 600 |
| HpyCH4IV | ACGT | 1 cut(s) | 980 |
| HpyCH4V | TGCA | 8 cut(s) | 29, 347, 380, 530, 609, 695, 753, 817 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 692 |
| HpyF3I | CTNAG | 4 cut(s) | 73, 149, 582, 834 |
| HpySE526I | ACGT | 1 cut(s) | 980 |
| Hsp92II | CATG | 3 cut(s) | 240, 328, 946 |
| Kzo9I | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| LmnI | GCTCC | 1 cut(s) | 256 |
| Lsp1109I | GCAGC | 3 cut(s) | 359, 679, 879 |
| LweI | GCATC | 3 cut(s) | 172, 466, 826 |
| MaeI | CTAG | 3 cut(s) | 125, 681, 780 |
| MaeII | ACGT | 1 cut(s) | 980 |
| MaeIII | GTNAC | 1 cut(s) | 706 |
| MalI | GATC | 5 cut(s) | 142, 375, 541, 555, 1105 |
| MboI | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| MflI | RGATCY | 3 cut(s) | 373, 539, 553 |
| MhlI | GDGCHC | 3 cut(s) | 74, 581, 755 |
| MluCI | AATT | 2 cut(s) | 247, 895 |
| MlyI | GAGTC | 2 cut(s) | 123, 299 |
| MmeI | TCCRAC | 3 cut(s) | 385, 544, 788 |
| MnlI | CCTC | 7 cut(s) | 196, 474, 662, 729, 838, 857, 1084 |
| MseI | TTAA | 2 cut(s) | 246, 428 |
| MspR9I | CCNGG | 1 cut(s) | 1101 |
| Mva1269I | GAATGC | 1 cut(s) | 870 |
| MvaI | CCWGG | 1 cut(s) | 1101 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 692 |
| NdeII | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| NlaIII | CATG | 3 cut(s) | 240, 328, 946 |
| NlaIV | GGNNCC | 1 cut(s) | 258 |
| NmuCI | GTSAC | 1 cut(s) | 706 |
| NspI | RCATGY | 1 cut(s) | 328 |
| PciI | ACATGT | 1 cut(s) | 324 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 772 |
| PctI | GAATGC | 1 cut(s) | 870 |
| PfeI | GAWTC | 3 cut(s) | 52, 385, 856 |
| PkrI | GCNGC | 3 cut(s) | 349, 694, 869 |
| PleI | GAGTC | 2 cut(s) | 122, 298 |
| PpsI | GAGTC | 2 cut(s) | 122, 298 |
| Ppu21I | YACGTR | 1 cut(s) | 981 |
| PscI | ACATGT | 1 cut(s) | 324 |
| Psp6I | CCWGG | 1 cut(s) | 1099 |
| PspGI | CCWGG | 1 cut(s) | 1099 |
| PspN4I | GGNNCC | 1 cut(s) | 258 |
| PsuI | RGATCY | 3 cut(s) | 373, 539, 553 |
| SaqAI | TTAA | 2 cut(s) | 246, 428 |
| SatI | GCNGC | 3 cut(s) | 348, 693, 868 |
| Sau3AI | GATC | 5 cut(s) | 140, 373, 539, 553, 1103 |
| SchI | GAGTC | 2 cut(s) | 123, 299 |
| ScrFI | CCNGG | 1 cut(s) | 1101 |
| SduI | GDGCHC | 3 cut(s) | 74, 581, 755 |
| SfaNI | GCATC | 3 cut(s) | 172, 466, 826 |
| SnaBI | TACGTA | 1 cut(s) | 981 |
| SpeI | ACTAGT | 1 cut(s) | 779 |
| Sse9I | AATT | 2 cut(s) | 247, 895 |
| SspMI | CTAG | 3 cut(s) | 125, 681, 780 |
| StyD4I | CCNGG | 1 cut(s) | 1099 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| TaiI | ACGT | 1 cut(s) | 983 |
| TaqI | TCGA | 2 cut(s) | 298, 1106 |
| TasI | AATT | 2 cut(s) | 247, 895 |
| TfiI | GAWTC | 3 cut(s) | 52, 385, 856 |
| Tru1I | TTAA | 2 cut(s) | 246, 428 |
| Tru9I | TTAA | 2 cut(s) | 246, 428 |
| TscAI | CASTG | 3 cut(s) | 81, 478, 667 |
| TseFI | GTSAC | 1 cut(s) | 706 |
| TseI | GCWGC | 3 cut(s) | 347, 692, 867 |
| Tsp45I | GTSAC | 1 cut(s) | 706 |
| TspDTI | ATGAA | 7 cut(s) | 145, 459, 564, 662, 931, 950, 1032 |
| TspRI | CASTG | 3 cut(s) | 81, 478, 667 |
| VneI | GTGCAC | 1 cut(s) | 751 |
| XceI | RCATGY | 1 cut(s) | 328 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XmiI | GTMKAC | 1 cut(s) | 654 |
| XspI | CTAG | 3 cut(s) | 125, 681, 780 |