pycom05g04910

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000562
Physical Location & Seq
Reverse (-)
5789257 .. 5789748
492 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04910.2

Sequence Viewer

Length: 402 bp
ATGAGTTTAATTACTTACCTTGGGTTCATAAATGGAAGCATCGAAGTTCCTGATGTTTCTTCACCAACTTATGAAATCTGGCTTTGCAAGGATCAGCTAGTTATGTCATGGCTCCTAAATTCCATGGAACGTAAACTAGCTGAAATATTCAGTTATTCTGAATCATCATTCAAACTATGGCAGACAGTCAAAGAAATGTATGGCAGCCAGAACAATGCTGCACGTGTGTTTCAATTGAAGAAGAACATTTCCAACATACAACAAGAAGGAAAGCCCTTTGTTCAACTTCTAGGCAGCATGAAGAGCATGTGGAATGAGCTGGAAATGTATCGGCCTCACACCACTGAGGCGTCTTTACTACTGAAAAGGGATACGAAGACCTACGAAGCCACATACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

134

Amino Acids

15.48

Weight (kDa)

6.59

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000562)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g17331 FvH4_3g36541
malus_domestica MD07G1078600.v1.1 MD10G1237700.v1.1 MD10G1333400.v1.1 MD11G1102200.v1.1 MD13G1138400.v1.1 MD14G1033400.v1.1 MD15G1053300.v1.1
prunus_persica Prupe.1G465400_v2.0.a1 Prupe.3G136000_v2.0.a1 Prupe.7G119900_v2.0.a1
pyrus_communis pycom01g04630 pycom03g13050 pycom04g21190 pycom05g04910 pycom05g05510 pycom08g15850 pycom09g15040 pycom1094g00010 pycom11g02000 pycom12g06150 pycom13g24110 pycom13g24910 pycom14g00050 pycom15g21970 pycom15g35170 pycom15g35180 pycom16g14620 pycom16g14630 pycom808g00110
rosa_chinensis RchiOBHm_Chr1g0322851 RchiOBHm_Chr1g0365941 RchiOBHm_Chr3g0453341 RchiOBHm_Chr4g0388371 RchiOBHm_Chr4g0394021 RchiOBHm_Chr5g0013181 RchiOBHm_Chr6g0261721 RchiOBHm_Chr6g0261731 RchiOBHm_Chr7g0188861 RchiOBHm_Chr7g0192331 RchiOBHm_Chr7g0231721
rosa_multiflora Rmu_sc0002521.1_g000006 Rmu_sc0003255.1_g000026 Rmu_sc0004191.1_g000036 Rmu_sc0004414.1_g000014 Rmu_sc0005670.1_g000006 Rmu_sc0006081.1_g000001 Rmu_sc0007215.1_g000004 Rmu_sc0010088.1_g000010 Rmu_sc0020285.1_g000003 Rmu_sc0026896.1_g000002 Rmu_ssc0000019.1_g000029
rosa_roxburghii Rroxscaffold_3G00224890 Rroxscaffold_6G00400640 Rroxscaffold_7G00176590 Rroxscaffold_7G00189230
rosa_samantha Rh4BG046700
rosa_wichuraiana Rw1G012690 Rw1G031370 Rw2G042180 Rw2G043670 Rw2G046240 Rw2G049890 Rw2G050760 Rw2G051280 Rw2G053590 Rw3G007590 Rw3G026850 Rw4G001540 Rw4G009760 Rw4G019270 Rw5G000720 Rw5G005620 Rw5G041560 Rw6G007370 Rw6G009830 Rw6G015360 Rw6G031160 Rw7G004930 Rw7G011010 Rw7G024230 Rw7G028240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 118
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 350
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 4 cut(s) 172, 233, 238, 284
AluBI AGCT 3 cut(s) 97, 140, 319
AluI AGCT 3 cut(s) 97, 140, 319
AlwI GGATC 1 cut(s) 99
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 204, 218, 294
ApoI RAATTY 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 383
BbvI GCAGC 3 cut(s) 205, 216, 306
BciVI GTATCC 1 cut(s) 364
BfaI CTAG 3 cut(s) 98, 137, 290
BfuI GTATCC 1 cut(s) 364
BisI GCNGC 3 cut(s) 205, 219, 295
BlsI GCNGC 3 cut(s) 206, 220, 296
BmiI GGNNCC 1 cut(s) 113
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 19, 123
BseDI CCNNGG 2 cut(s) 19, 123
BseMII CTCAG 1 cut(s) 336
BseXI GCAGC 3 cut(s) 205, 216, 306
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 334
BsnI GGCC 1 cut(s) 334
Bsp143I GATC 1 cut(s) 91
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 1 cut(s) 99
BspQI GCTCTTC 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 19, 123
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 350
BssT1I CCWWGG 2 cut(s) 19, 123
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 123
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 310
BstV1I GCAGC 3 cut(s) 205, 216, 306
BstV2I GAAGAC 1 cut(s) 383
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 342
CciI TCATGA 1 cut(s) 398
CseI GACGC 1 cut(s) 339
CviAII CATG 5 cut(s) 108, 124, 298, 307, 399
CviJI RGCY 9 cut(s) 82, 97, 112, 140, 207, 274, 319, 334, 389
CviKI_1 RGCY 9 cut(s) 82, 97, 112, 140, 207, 274, 319, 334, 389
DdeI CTNAG 1 cut(s) 345
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 19, 123
Eco72I CACGTG 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 19, 123
ErhI CCWWGG 2 cut(s) 19, 123
FaeI CATG 5 cut(s) 111, 127, 301, 310, 402
FatI CATG 5 cut(s) 107, 123, 297, 306, 398
Fnu4HI GCNGC 3 cut(s) 205, 219, 295
Fsp4HI GCNGC 3 cut(s) 205, 219, 295
FspBI CTAG 3 cut(s) 98, 137, 290
GluI GCNGC 3 cut(s) 205, 219, 295
HaeIII GGCC 1 cut(s) 334
HgaI GACGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 5 cut(s) 111, 127, 301, 310, 402
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 50, 399
Hpy8I GTNNAC 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 130, 223
HpyCH4V TGCA 2 cut(s) 87, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 130, 223
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 5 cut(s) 111, 127, 301, 310, 402
Kzo9I GATC 1 cut(s) 91
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 4 cut(s) 63, 64, 221, 305
Lsp1109I GCAGC 3 cut(s) 205, 216, 306
LweI GCATC 1 cut(s) 48
MaeI CTAG 3 cut(s) 98, 137, 290
MaeII ACGT 2 cut(s) 130, 223
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 5 cut(s) 51, 250, 253, 313, 388
MfeI CAATTG 1 cut(s) 233
MluCI AATT 3 cut(s) 9, 118, 233
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 2 cut(s) 340, 345
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 397
MunI CAATTG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 303
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 91
NlaIII CATG 5 cut(s) 111, 127, 301, 310, 402
NlaIV GGNNCC 1 cut(s) 113
NspI RCATGY 1 cut(s) 310
PagI TCATGA 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 3 cut(s) 206, 220, 296
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PspCI CACGTG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 397
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 3 cut(s) 205, 219, 295
Sau3AI GATC 1 cut(s) 91
SetI ASST 7 cut(s) 21, 99, 133, 142, 226, 321, 383
SfaNI GCATC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 397
Sse9I AATT 3 cut(s) 9, 118, 233
SspI AATATT 1 cut(s) 147
SspMI CTAG 3 cut(s) 98, 137, 290
StyI CCWWGG 2 cut(s) 19, 123
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 2 cut(s) 133, 226
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 9, 118, 233
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 349
TseI GCWGC 3 cut(s) 204, 218, 294
TspDTI ATGAA 3 cut(s) 16, 87, 314
TspRI CASTG 1 cut(s) 349
XapI RAATTY 1 cut(s) 118
XceI RCATGY 1 cut(s) 310
XspI CTAG 3 cut(s) 98, 137, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.