pycom15g34490
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000389
Physical Location & Seq
Reverse (-)
34249394 .. 34262448
13055 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGATGAGGGATAAGATACAGATCAGGAAGATCAACTACTTGCCGGCAAGGCAGGTGACCTTCTCAAAGAGGAGAAGGGGTATTTTCAAGAAAGCTGGAGAGCTGTCGGTTCTGTGCGACTCTGAAGTAGCTGTTATCATCTTTTCTCAAACTGGCAAGCTCTTTGATTTCTCAAGCTCCAGTACCAAGGATATGATTGCAAGGTACAACTCACATACTGGTAGGGAAAACTCGGATCAACCCATGCAGTTGGAGAAAAAAAACAAGATCAGGCTGAGTAAGGAACTCAAGGATAAGAGCCGCAAGCTGAGGCAGATGAAGGGCGAGGACCTTGAAGACTTGGATCTCGATGAACTGCAGAAGTTAGAAAAATTGGTGAAAGTAAGCCTTGGCCGTGTGATTCAAGCCAAGGTCTGTGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

142

Amino Acids

16.28

Weight (kDa)

9.89

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 57 3.6e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 83 - 137 1.4e-07 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AciI CCGC 1 cut(s) 301
AclWI GGATC 2 cut(s) 243, 351
AcoI YGGCCR 1 cut(s) 391
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 184, 206
AgsI TTSAA 3 cut(s) 88, 335, 404
AluBI AGCT 7 cut(s) 95, 103, 131, 160, 177, 307, 423
AluI AGCT 7 cut(s) 95, 103, 131, 160, 177, 307, 423
AlwI GGATC 2 cut(s) 243, 351
AoxI GGCC 1 cut(s) 391
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 67, 388
AsuNHI GCTAGC 1 cut(s) 419
AvaII GGWCC 1 cut(s) 328
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BbsI GAAGAC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 308
BceAI ACGGC 1 cut(s) 378
BfaI CTAG 2 cut(s) 420, 424
BfmI CTRYAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 43
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmtI GCTAGC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 2 cut(s) 117, 163
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 2 cut(s) 157, 272
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 186, 388, 408
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 3 cut(s) 157, 180, 223
Bse8I GATNNNNATC 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 186, 388, 408
BseJI GATNNNNATC 1 cut(s) 20
BseMII CTCAG 2 cut(s) 266, 299
BseNI ACTGG 3 cut(s) 157, 180, 223
BseRI GAGGAG 1 cut(s) 85
BshFI GGCC 1 cut(s) 393
BsiSI CCGG 1 cut(s) 44
BsnI GGCC 1 cut(s) 393
Bsp143I GATC 5 cut(s) 21, 30, 235, 267, 343
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 393
BspCNI CTCAG 2 cut(s) 267, 300
BspMAI CTGCAG 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 43
BspOI GCTAGC 1 cut(s) 423
BspPI GGATC 2 cut(s) 243, 351
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 3 cut(s) 157, 180, 223
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 186, 388, 408
BssMI GATC 5 cut(s) 21, 30, 235, 267, 343
BssT1I CCWWGG 3 cut(s) 186, 388, 408
BstC8I GCNNGC 4 cut(s) 45, 158, 305, 421
BstDEI CTNAG 2 cut(s) 275, 308
BstEII GGTNACC 1 cut(s) 55
BstKTI GATC 5 cut(s) 24, 33, 238, 270, 346
BstMBI GATC 5 cut(s) 21, 30, 235, 267, 343
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstPI GGTNACC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 356
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 393
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 4 cut(s) 45, 158, 305, 421
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 183, 205
CviAII CATG 1 cut(s) 244
CviQI GTAC 2 cut(s) 183, 205
DdeI CTNAG 2 cut(s) 275, 308
DpnI GATC 5 cut(s) 23, 32, 237, 269, 345
DpnII GATC 5 cut(s) 21, 30, 235, 267, 343
EaeI YGGCCR 1 cut(s) 391
Eco130I CCWWGG 3 cut(s) 186, 388, 408
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 328
EcoO65I GGTNACC 1 cut(s) 55
EcoT14I CCWWGG 3 cut(s) 186, 388, 408
ErhI CCWWGG 3 cut(s) 186, 388, 408
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 194, 216, 245
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 420, 424
GluI GCNGC 1 cut(s) 301
GsuI CTGGAG 2 cut(s) 117, 163
HaeIII GGCC 1 cut(s) 393
HapII CCGG 1 cut(s) 44
Hin1II CATG 1 cut(s) 247
HinfI GANTC 2 cut(s) 119, 400
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 67, 388
Hpy188I TCNGA 2 cut(s) 124, 235
Hpy188III TCNNGA 3 cut(s) 25, 88, 347
HpyAV CCTTC 3 cut(s) 69, 70, 313
HpyCH4V TGCA 3 cut(s) 200, 247, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 2 cut(s) 275, 308
Hsp92II CATG 1 cut(s) 247
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 5 cut(s) 21, 30, 235, 267, 343
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 8 cut(s) 10, 38, 57, 81, 138, 193, 204, 256
MaeI CTAG 2 cut(s) 420, 424
MaeIII GTNAC 1 cut(s) 55
MalI GATC 5 cut(s) 23, 32, 237, 269, 345
MboI GATC 5 cut(s) 21, 30, 235, 267, 343
MboII GAAGA 2 cut(s) 40, 347
MflI RGATCY 1 cut(s) 343
MluCI AATT 1 cut(s) 371
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 3 cut(s) 63, 303, 319
MroNI GCCGGC 1 cut(s) 43
MspI CCGG 1 cut(s) 44
MwoI GCNNNNNNNGC 1 cut(s) 49
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 5 cut(s) 21, 30, 235, 267, 343
NgoMIV GCCGGC 1 cut(s) 43
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 55
PaqCI CACCTGC 1 cut(s) 43
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
PspEI GGTNACC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 1 cut(s) 360
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 184, 206
RsaNI GTAC 2 cut(s) 183, 205
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 5 cut(s) 21, 30, 235, 267, 343
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 1 cut(s) 113
SfcI CTRYAG 1 cut(s) 356
SinI GGWCC 1 cut(s) 328
SmlI CTYRAG 2 cut(s) 172, 287
SmoI CTYRAG 2 cut(s) 172, 287
Sse9I AATT 1 cut(s) 371
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 420, 424
StyI CCWWGG 3 cut(s) 186, 388, 408
TaqI TCGA 1 cut(s) 348
TasI AATT 1 cut(s) 371
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 1 cut(s) 400
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 332, 366
VpaK11BI GGWCC 1 cut(s) 328
XspI CTAG 2 cut(s) 420, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.