pycom16g19230
MYB Family

nuclease activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
16231285 .. 16231879
595 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGTTTGATTTCACTATTAATTGTGGTGTGTGTACACATTGGACTGTCAGTAGAAATTTTAACAAAGTTTTGAAGGCCTTGAACACAATAACACCAGAGATGATGGGCAAACATGGATTAGCAGTGCCATCTAGAATAAGGGAAAATACGAGATTTTACCCTTACTTGAAGGTACGTATAGTACGTTGTGTTTTTTTTTTTTTTTTTTTTGCATCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.66

Weight (kDa)

10.05

Isoelectric Point (pI)

21.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000697)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G35695
fragaria_vesca FvH4_4g17331 FvH4_6g20420 FvH4_6g24701 FvH4_6g52063
malus_domestica MD12G1024500.v1.1
prunus_persica Prupe.2G004900_v2.0.a1
pyrus_communis pycom10g09210 pycom111g03680 pycom12g13430 pycom16g19230
rosa_chinensis RchiOBHm_Chr5g0050651 RchiOBHm_Chr5g0054101 RchiOBHm_Chr6g0281391
rosa_multiflora Rmu_sc0000029.1_g000014 Rmu_sc0000147.1_g000039 Rmu_sc0000548.1_g000007 Rmu_sc0000913.1_g000001 Rmu_sc0000932.1_g000010 Rmu_sc0001304.1_g000041 Rmu_sc0001969.1_g000002 Rmu_sc0002357.1_g000042 Rmu_sc0002848.1_g000001 Rmu_sc0003113.1_g000003 Rmu_sc0003553.1_g000010 Rmu_sc0003642.1_g000003 Rmu_sc0004160.1_g000001 Rmu_sc0004511.1_g000001 Rmu_sc0004816.1_g000009 Rmu_sc0005500.1_g000008 Rmu_sc0005782.1_g000004 Rmu_sc0006833.1_g000005 Rmu_sc0007173.1_g000003 Rmu_sc0009973.1_g000001 Rmu_sc0016181.1_g000003 Rmu_sc0017974.1_g000001 Rmu_ssc0000255.1_g000020 Rmu_ssc0000263.1_g000011 Rmu_ssc0000366.1_g000012
rosa_roxburghii Rroxscaffold_1G00010110 Rroxscaffold_1G00023070 Rroxscaffold_1G00042980 Rroxscaffold_3G00273770 Rroxscaffold_4G00318480 Rroxscaffold_4G00323200 Rroxscaffold_5G00335150 Rroxscaffold_5G00340530 Rroxscaffold_5G00349500 Rroxscaffold_6G00401310 Rroxscaffold_6G00405610 Rroxscaffold_6G00409810 Rroxscaffold_7G00190250
rosa_rugosa Rorug04G0114300 Rorug05G0441600 Rorug07G0169600
rosa_wichuraiana Rw0G006340 Rw0G016280 Rw0G021420 Rw1G001890 Rw1G009310 Rw1G011130 Rw1G012600 Rw1G017460 Rw2G022560 Rw3G020960 Rw4G006850 Rw4G009950 Rw4G032810 Rw6G003640 Rw6G018030 Rw6G032240 Rw7G024530 Rw7G036060 Rw7G036830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 3 cut(s) 34, 174, 183
AgsI TTSAA 3 cut(s) 73, 82, 169
AoxI GGCC 1 cut(s) 75
ApoI RAATTY 1 cut(s) 55
AseI ATTAAT 1 cut(s) 18
BccI CCATC 2 cut(s) 97, 136
BfaI CTAG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 176
BshFI GGCC 1 cut(s) 77
BsnI GGCC 1 cut(s) 77
Bsp1407I TGTACA 1 cut(s) 32
BspANI GGCC 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 46
BstAUI TGTACA 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 176
BstSNI TACGTA 1 cut(s) 176
BsuRI GGCC 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 129
Csp6I GTAC 3 cut(s) 33, 173, 182
CviAII CATG 1 cut(s) 113
CviJI RGCY 1 cut(s) 77
CviKI_1 RGCY 1 cut(s) 77
CviQI GTAC 3 cut(s) 33, 173, 182
Eco105I TACGTA 1 cut(s) 176
Eco147I AGGCCT 1 cut(s) 77
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 114, 179
FatI CATG 1 cut(s) 112
FspBI CTAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 33, 35
Hpy188III TCNNGA 1 cut(s) 132
Hpy8I GTNNAC 2 cut(s) 33, 35
HpyAV CCTTC 2 cut(s) 67, 163
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 175, 184
HpyCH4V TGCA 1 cut(s) 212
HpySE526I ACGT 2 cut(s) 175, 184
Hsp92II CATG 1 cut(s) 116
LpnPI CCDG 1 cut(s) 108
MaeI CTAG 1 cut(s) 132
MaeII ACGT 2 cut(s) 175, 184
MluCI AATT 2 cut(s) 19, 55
MseI TTAA 2 cut(s) 18, 60
NlaIII CATG 1 cut(s) 116
PceI AGGCCT 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 176
PshBI ATTAAT 1 cut(s) 18
RsaI GTAC 3 cut(s) 34, 174, 183
RsaNI GTAC 3 cut(s) 33, 173, 182
SaqAI TTAA 2 cut(s) 18, 60
SetI ASST 3 cut(s) 174, 178, 187
SgeI CNNG 6 cut(s) 91, 107, 125, 144, 162, 178
SnaBI TACGTA 1 cut(s) 176
Sse9I AATT 2 cut(s) 19, 55
SseBI AGGCCT 1 cut(s) 77
SspMI CTAG 1 cut(s) 132
StuI AGGCCT 1 cut(s) 77
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 178, 187
TasI AATT 2 cut(s) 19, 55
TatI WGTACW 1 cut(s) 32
Tru1I TTAA 2 cut(s) 18, 60
Tru9I TTAA 2 cut(s) 18, 60
TscAI CASTG 1 cut(s) 129
TspRI CASTG 1 cut(s) 129
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 131
XspI CTAG 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.