pycom17g08710

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000768
Physical Location & Seq
Forward (+)
6540919 .. 6543425
2507 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1287 bp
ATGTATTTAGTAGCTAGATTCACGGATGGTAATGGAAGTTTCAAGGCATGGCTTTGCGAGGATGTAAAGGGAATGCTTAGTCTATACGAAGCTTCATATTTTTCTTTTGAAGGAGAGAGCCTCTTGGATGAGGGCCTTGCATTCTCAACCATTTATCTCAAGAACCTCAGTGGAGCCAATGTTACAAAAGGACTAGCAGAACAAGTGAGTCATGCACTGGAACTTCCACTGCACCATAGAATGCAAAGATTAGAAGCTAGATGGTACATTGAGGCATACAGTAAAAGGCCAGATGCAAATCACGCACTACTTGAAATTGCGAAGCGAGATTTTAACAAGGTGCAATCTACACTCCAAAGGGATCTTAAAGAAGTATCAAGGTGGTGGGTGGATATGGGGTTAGCAAAAAAGTTGAGCTTCATCAGAGACAGATTGATGGAGTGCTTTTTTTGGTCGATTGGAATCGTCTTTGAACCTCAACACAGTCATGTCAGGAAAGAGTTGACCAAAGTGGCTGCTCTAGTAACCACCATTGATGATGTCTATGATGTTTGTGGTACTTTGGATGAACTAGAGCTTTTTACTTCTGCTGTTGAAAGATGGGATATCAAAGCTGTAGAAAATCTCCCAGATTACATGAAGCTTTGTTTTCTAGCTCTTTATAACACAGTGAATGAGATGGTTTACGACACTCTAAAGGAGCAAGGAGAAAACGCCCTCCCTTATGTCACAAAAACTTGGGCTGATTTGTGCAAAGCATTTCTTAAGGAGACAACGTGGCTCTATAACAAGCACATACCCACATCTGAAGAATATATCGACACTGCATGGATATCAGCCTCAGGAGTGGTGGTGTTAGTTCATACATATTTTCTCCTCACCCCAAAGATCACAAAGCAAGCACTTGAATGCTTAGAAAATCACCACAATCTCTTGCGTTGGCCATCTCTTATTTTCCGGCTTTGCAATGATTTGAGTACTTTCGAAGCAGAAGTGCAGAGAGGAGAAACTGCGAACTCAATCTCATGCATGACGCGTGGCGGTATGAATGTTTCTGAGGAATTTGCTCGCGAATATATAAGTAATTTGGTTCAAAACAGTTGGAAGAAGCTGAACAAAGATGGAGCTTCTGGTTCTCCATTTACAGAGCAATTTGTACAAGCAGCAAGAAACCTTGCTCGGATTTCCCAATGCGTATACCAATATGGTGATGGGCATGGAGCTCCAGACACAAGAGCAAAGAATCGAATCCTATCAGTTATTATCGATCCCATTAAAGGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

429

Amino Acids

48.95

Weight (kDa)

5.84

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 5 - 73 4e-17 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 131 - 370 3.4e-89 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 170 - 370 3.7e-53 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccI GTMKAC 1 cut(s) 1197
AccII CGCG 2 cut(s) 1036, 1071
AciI CCGC 1 cut(s) 1041
AclWI GGATC 2 cut(s) 369, 1262
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 1 cut(s) 1061
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 4 cut(s) 266, 559, 979, 1158
AfiI CCNNNNNNNGG 1 cut(s) 1277
AflII CTTAAG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 1034
AgsI TTSAA 7 cut(s) 43, 110, 314, 473, 596, 908, 1094
Alw21I GWGCWC 1 cut(s) 1225
Alw26I GTCTC 2 cut(s) 420, 764
AlwI GGATC 2 cut(s) 369, 1262
AoxI GGCC 3 cut(s) 133, 287, 941
ApeKI GCWGC 2 cut(s) 515, 1163
ApoI RAATTY 1 cut(s) 1061
AspS9I GGNCC 2 cut(s) 133, 1280
AsuHPI GGTGA 3 cut(s) 871, 914, 1220
AsuII TTCGAA 1 cut(s) 984
AvaII GGWCC 1 cut(s) 1280
AxyI CCTNAGG 1 cut(s) 841
BalI TGGCCA 1 cut(s) 943
BanII GRGCYC 1 cut(s) 1225
Bbv12I GWGCWC 1 cut(s) 1225
BbvI GCAGC 2 cut(s) 502, 1175
BccI CCATC 8 cut(s) 20, 255, 430, 594, 673, 952, 1115, 1205
BcoDI GTCTC 2 cut(s) 420, 764
BfaI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
BfmI CTRYAG 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 764
BisI GCNGC 2 cut(s) 516, 1164
BlsI GCNGC 2 cut(s) 517, 1165
BmcAI AGTACT 1 cut(s) 979
Bme18I GGWCC 1 cut(s) 1280
BmgT120I GGNCC 2 cut(s) 133, 1280
BmiI GGNNCC 1 cut(s) 175
BmsI GCATC 1 cut(s) 283
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 1209
Bpu14I TTCGAA 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 1266
BsaBI GATNNNNATC 2 cut(s) 297, 461
BsaXI ACNNNNNCTCC 6 cut(s) 165, 195, 761, 791, 837, 867
Bsc4I CCNNNNNNNGG 1 cut(s) 1277
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 841
Bse3DI GCAATG 1 cut(s) 973
Bse8I GATNNNNATC 2 cut(s) 297, 461
BseCI ATCGAT 1 cut(s) 1266
BseGI GGATG 4 cut(s) 31, 67, 133, 571
BseJI GATNNNNATC 2 cut(s) 297, 461
BseLI CCNNNNNNNGG 1 cut(s) 1277
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 3 cut(s) 181, 855, 1047
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 866, 1017
BseXI GCAGC 2 cut(s) 502, 1175
BsgI GTGCAG 2 cut(s) 215, 1016
Bsh1236I CGCG 2 cut(s) 1036, 1071
BshFI GGCC 3 cut(s) 135, 289, 943
BshVI ATCGAT 1 cut(s) 1266
BsiHKAI GWGCWC 1 cut(s) 1225
BsiSI CCGG 1 cut(s) 958
BslI CCNNNNNNNGG 1 cut(s) 1277
BsmAI GTCTC 2 cut(s) 420, 764
BsmI GAATGC 4 cut(s) 78, 140, 246, 914
BsnI GGCC 3 cut(s) 135, 289, 943
Bsp119I TTCGAA 1 cut(s) 984
Bsp1286I GDGCHC 1 cut(s) 1225
Bsp1407I TGTACA 1 cut(s) 1156
Bsp143I GATC 3 cut(s) 361, 888, 1267
Bsp68I TCGCGA 1 cut(s) 1071
BspACI CCGC 1 cut(s) 1041
BspANI GGCC 3 cut(s) 135, 289, 943
BspCNI CTCAG 3 cut(s) 180, 854, 1048
BspDI ATCGAT 1 cut(s) 1266
BspFNI CGCG 2 cut(s) 1036, 1071
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 2 cut(s) 369, 1262
BspT104I TTCGAA 1 cut(s) 984
BspTI CTTAAG 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 973
BsrGI TGTACA 1 cut(s) 1156
BsrI ACTGG 1 cut(s) 222
BssMI GATC 3 cut(s) 361, 888, 1267
BssNAI GTATAC 1 cut(s) 1198
Bst1107I GTATAC 1 cut(s) 1198
Bst4CI ACNGT 4 cut(s) 281, 485, 670, 1100
BstAFI CTTAAG 1 cut(s) 764
BstAUI TGTACA 1 cut(s) 1156
BstBI TTCGAA 1 cut(s) 984
BstC8I GCNNGC 2 cut(s) 900, 1069
BstDEI CTNAG 5 cut(s) 77, 167, 841, 913, 1056
BstF5I GGATG 4 cut(s) 31, 67, 133, 571
BstFNI CGCG 2 cut(s) 1036, 1071
BstKTI GATC 3 cut(s) 364, 891, 1270
BstMAI GTCTC 2 cut(s) 420, 764
BstMBI GATC 3 cut(s) 361, 888, 1267
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 2 cut(s) 1036, 1071
BstV1I GCAGC 2 cut(s) 502, 1175
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BstZ17I GTATAC 1 cut(s) 1198
Bsu15I ATCGAT 1 cut(s) 1266
Bsu36I CCTNAGG 1 cut(s) 841
BsuRI GGCC 3 cut(s) 135, 289, 943
BsuTUI ATCGAT 1 cut(s) 1266
BtsCI GGATG 4 cut(s) 31, 67, 133, 571
BtsI GCAGTG 2 cut(s) 227, 822
BtsIMutI CAGTG 5 cut(s) 175, 215, 227, 675, 822
BtuMI TCGCGA 1 cut(s) 1071
Cac8I GCNNGC 2 cut(s) 900, 1069
Cfr13I GGNCC 2 cut(s) 133, 1280
ClaI ATCGAT 1 cut(s) 1266
CseI GACGC 1 cut(s) 1042
Csp6I GTAC 4 cut(s) 265, 558, 978, 1157
CviAII CATG 8 cut(s) 48, 212, 488, 637, 828, 1026, 1030, 1217
CviQI GTAC 4 cut(s) 265, 558, 978, 1157
DdeI CTNAG 5 cut(s) 77, 167, 841, 913, 1056
DpnI GATC 3 cut(s) 363, 890, 1269
DpnII GATC 3 cut(s) 361, 888, 1267
EaeI YGGCCR 1 cut(s) 941
Ecl136II GAGCTC 1 cut(s) 1223
Eco24I GRGCYC 1 cut(s) 1225
Eco32I GATATC 2 cut(s) 607, 834
Eco47I GGWCC 1 cut(s) 1280
Eco53kI GAGCTC 1 cut(s) 1223
Eco57I CTGAAG 1 cut(s) 828
Eco81I CCTNAGG 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 1223
EcoO109I RGGNCCY 1 cut(s) 133
EcoRV GATATC 2 cut(s) 607, 834
EcoT22I ATGCAT 1 cut(s) 1031
EcoT38I GRGCYC 1 cut(s) 1225
FaeI CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 747, 779
FatI CATG 8 cut(s) 47, 211, 487, 636, 827, 1025, 1029, 1216
FblI GTMKAC 1 cut(s) 1197
Fnu4HI GCNGC 2 cut(s) 516, 1164
FokI GGATG 4 cut(s) 38, 74, 140, 578
FriOI GRGCYC 1 cut(s) 1225
Fsp4HI GCNGC 2 cut(s) 516, 1164
FspBI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
GluI GCNGC 2 cut(s) 516, 1164
GsuI CTGGAG 1 cut(s) 1209
HaeIII GGCC 3 cut(s) 135, 289, 943
HapII CCGG 1 cut(s) 958
HgaI GACGC 1 cut(s) 1042
Hin1II CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HindIII AAGCTT 2 cut(s) 90, 641
HinfI GANTC 5 cut(s) 18, 208, 462, 1243, 1248
HpaII CCGG 1 cut(s) 958
HphI GGTGA 3 cut(s) 871, 914, 1220
Hpy166II GTNNAC 3 cut(s) 504, 685, 1198
Hpy188I TCNGA 4 cut(s) 425, 808, 1057, 1182
Hpy188III TCNNGA 5 cut(s) 160, 493, 843, 1070, 1226
Hpy8I GTNNAC 3 cut(s) 504, 685, 1198
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 4 cut(s) 281, 485, 670, 1100
HpyCH4IV ACGT 1 cut(s) 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 5 cut(s) 77, 167, 841, 913, 1056
HpySE526I ACGT 1 cut(s) 776
Hsp92II CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
Kzo9I GATC 3 cut(s) 361, 888, 1267
LmnI GCTCC 5 cut(s) 173, 700, 1124, 1220, 1228
LpnPI CCDG 8 cut(s) 203, 303, 478, 642, 828, 971, 1116, 1239
Lsp1109I GCAGC 2 cut(s) 502, 1175
LweI GCATC 1 cut(s) 283
MaeI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
MaeII ACGT 1 cut(s) 776
MaeIII GTNAC 3 cut(s) 181, 523, 727
MalI GATC 3 cut(s) 363, 890, 1269
MboI GATC 3 cut(s) 361, 888, 1267
MboII GAAGA 2 cut(s) 821, 1117
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 1225
MlsI TGGCCA 1 cut(s) 943
MluCI AATT 4 cut(s) 315, 1061, 1084, 1151
MluI ACGCGT 1 cut(s) 1034
MluNI TGGCCA 1 cut(s) 943
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 1082
Mox20I TGGCCA 1 cut(s) 943
Mph1103I ATGCAT 1 cut(s) 1031
MscI TGGCCA 1 cut(s) 943
MseI TTAA 4 cut(s) 333, 366, 765, 1275
MslI CAYNNNNRTG 2 cut(s) 486, 907
Msp20I TGGCCA 1 cut(s) 943
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 1 cut(s) 958
Mva1269I GAATGC 4 cut(s) 78, 140, 246, 914
MvnI CGCG 2 cut(s) 1036, 1071
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 3 cut(s) 361, 888, 1267
NlaIII CATG 8 cut(s) 51, 215, 491, 640, 831, 1029, 1033, 1220
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 727
NruI TCGCGA 1 cut(s) 1071
NsiI ATGCAT 1 cut(s) 1031
NspV TTCGAA 1 cut(s) 984
PctI GAATGC 4 cut(s) 78, 140, 246, 914
PfeI GAWTC 4 cut(s) 18, 462, 1243, 1248
PkrI GCNGC 2 cut(s) 517, 1165
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 1225
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 133, 1280
PsuI RGATCY 1 cut(s) 361
RruI TCGCGA 1 cut(s) 1071
RsaI GTAC 4 cut(s) 266, 559, 979, 1158
RsaNI GTAC 4 cut(s) 265, 558, 978, 1157
RseI CAYNNNNRTG 2 cut(s) 486, 907
SacI GAGCTC 1 cut(s) 1225
SaqAI TTAA 4 cut(s) 333, 366, 765, 1275
SatI GCNGC 2 cut(s) 516, 1164
Sau3AI GATC 3 cut(s) 361, 888, 1267
Sau96I GGNCC 2 cut(s) 133, 1280
ScaI AGTACT 1 cut(s) 979
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 1225
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 984
SinI GGWCC 1 cut(s) 1280
SmiMI CAYNNNNRTG 2 cut(s) 486, 907
SmlI CTYRAG 2 cut(s) 158, 764
SmoI CTYRAG 2 cut(s) 158, 764
Sse9I AATT 4 cut(s) 315, 1061, 1084, 1151
SsiI CCGC 1 cut(s) 1041
SspMI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
SstI GAGCTC 1 cut(s) 1225
TaaI ACNGT 4 cut(s) 281, 485, 670, 1100
TaiI ACGT 1 cut(s) 779
TaqI TCGA 5 cut(s) 455, 819, 984, 1246, 1266
TasI AATT 4 cut(s) 315, 1061, 1084, 1151
TatI WGTACW 2 cut(s) 977, 1156
TfiI GAWTC 4 cut(s) 18, 462, 1243, 1248
Tru1I TTAA 4 cut(s) 333, 366, 765, 1275
Tru9I TTAA 4 cut(s) 333, 366, 765, 1275
TscAI CASTG 5 cut(s) 175, 222, 234, 675, 829
TseFI GTSAC 1 cut(s) 727
TseI GCWGC 2 cut(s) 515, 1163
Tsp45I GTSAC 1 cut(s) 727
TspDTI ATGAA 6 cut(s) 84, 409, 582, 653, 851, 1061
TspGWI ACGGA 1 cut(s) 38
TspRI CASTG 5 cut(s) 175, 222, 234, 675, 829
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 1280
XapI RAATTY 1 cut(s) 1061
XcmI CCANNNNNNNNNTGG 1 cut(s) 1208
XmiI GTMKAC 1 cut(s) 1197
XspI CTAG 6 cut(s) 15, 194, 258, 521, 572, 653
ZrmI AGTACT 1 cut(s) 979
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.