RchiOBHm_Chr4g0385041

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001347
Physical Location & Seq
Forward (+)
445483 .. 445761
279 bp
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UTR
Exon/CDS
Intron
PRQ35857

Sequence Viewer

Length: 171 bp
ATGCCTACTATCTATGACACTTTGGATTCTGGGTTCGGAGACCACTCTGAAGCAGCCGAGCAACACCCTCTGCCATCTGTTATTCTTGATGACTCCCATGCCTATGCCATTGAGGTAGCTGCTGCGGCTCCAGATCATGAGCCAGAACATGAGCCGTTTGTCCATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.08

Weight (kDa)

4.26

Isoelectric Point (pI)

68.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 69
AloI GAACNNNNNNTCC 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 53, 119, 122
BbvI GCAGC 3 cut(s) 65, 106, 109
BccI CCATC 1 cut(s) 82
BceAI ACGGC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 33
BisI GCNGC 4 cut(s) 54, 120, 123, 126
BlsI GCNGC 4 cut(s) 55, 121, 124, 127
BmiI GGNNCC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 33
BseGI GGATG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 65, 106, 109
BsmAI GTCTC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 125
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 33
BssMI GATC 1 cut(s) 133
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 65, 106, 109
BtsCI GGATG 1 cut(s) 163
CciI TCATGA 1 cut(s) 136
CviAII CATG 3 cut(s) 98, 137, 149
CviJI RGCY 5 cut(s) 56, 119, 128, 142, 154
CviKI_1 RGCY 5 cut(s) 56, 119, 128, 142, 154
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 69
FaeI CATG 3 cut(s) 101, 140, 152
FaiI YATR 5 cut(s) 15, 99, 105, 138, 150
FatI CATG 3 cut(s) 97, 136, 148
Fnu4HI GCNGC 4 cut(s) 54, 120, 123, 126
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 54, 120, 123, 126
GluI GCNGC 4 cut(s) 54, 120, 123, 126
GsuI CTGGAG 1 cut(s) 114
Hin1II CATG 3 cut(s) 101, 140, 152
HinfI GANTC 2 cut(s) 26, 92
Hpy188I TCNGA 2 cut(s) 38, 49
Hpy188III TCNNGA 3 cut(s) 86, 131, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 101, 140, 152
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 15, 144, 156
Lsp1109I GCAGC 3 cut(s) 65, 106, 109
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 2 cut(s) 78, 106
MseI TTAA 1 cut(s) 169
MslI CAYNNNNRTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 101, 140, 152
NlaIV GGNNCC 1 cut(s) 129
NmeAIII GCCGAG 1 cut(s) 82
PagI TCATGA 1 cut(s) 136
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 4 cut(s) 55, 121, 124, 127
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 169
SatI GCNGC 4 cut(s) 54, 120, 123, 126
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 86
SetI ASST 2 cut(s) 117, 121
SgeI CNNG 8 cut(s) 42, 70, 98, 110, 143, 149, 155, 161
SmiMI CAYNNNNRTG 1 cut(s) 102
SsiI CCGC 1 cut(s) 125
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 169
Tru9I TTAA 1 cut(s) 169
TseI GCWGC 3 cut(s) 53, 119, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.