Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

45344011 .. 45351689

Gene Structure 7679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGCAGCCTCTTCCGCCGCCTGTCCAGCTCGGCGAGATCACCGCCAAGGAGCTCAAGCAGTATGACTGCTCCGATCCCAAGAAGCCTCTGCTCATGGCCGTCAAGTCTCAGATCTATGACGTGTCTCAGAGCAGTTTCCTTGTTGCTGTCAACAAGTCCTTAGTACTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

57

Amino Acids

6.34

Weight (kDa)

8.89

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	14, 17, 42
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	96
AfaI	GTAC	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	120
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	2 cut(s)	28, 52
AluI	AGCT	2 cut(s)	28, 52
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	111, 129
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	111, 129
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	2 cut(s)	5, 17
BlsI	GCNGC	2 cut(s)	6, 18
BmcAI	AGTACT	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	122, 140
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	111, 129
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	36, 73, 111
BspACI	CCGC	3 cut(s)	14, 17, 42
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	121, 139
BspPI	GGATC	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	36, 73, 111
BssT1I	CCWWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	108, 126, 160
BstKTI	GATC	3 cut(s)	39, 76, 114
BstMAI	GTCTC	2 cut(s)	111, 129
BstMBI	GATC	3 cut(s)	36, 73, 111
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 25
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	5 cut(s)	7, 28, 52, 85, 98
CviKI_1	RGCY	5 cut(s)	7, 28, 52, 85, 98
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	3 cut(s)	108, 126, 160
DpnI	GATC	3 cut(s)	38, 75, 113
DpnII	GATC	3 cut(s)	36, 73, 111
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	45
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	97
FaiI	YATR	3 cut(s)	63, 95, 117
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	5, 17
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	5, 17
GluI	GCNGC	2 cut(s)	5, 17
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	73, 111, 129
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 25
HpyF3I	CTNAG	3 cut(s)	108, 126, 160
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	36, 73, 111
LmnI	GCTCC	2 cut(s)	49, 74
LpnPI	CCDG	2 cut(s)	33, 38
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	120
MalI	GATC	3 cut(s)	38, 75, 113
MboI	GATC	3 cut(s)	36, 73, 111
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	54
MnlI	CCTC	2 cut(s)	18, 96
MspI	CCGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	13, 25
NdeII	GATC	3 cut(s)	36, 73, 111
NlaIII	CATG	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	6, 18
Psp124BI	GAGCTC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	2 cut(s)	5, 17
Sau3AI	GATC	3 cut(s)	36, 73, 111
ScaI	AGTACT	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	3 cut(s)	30, 54, 123
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SsiI	CCGC	3 cut(s)	14, 17, 42
SstI	GAGCTC	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	4
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.