Rroxscaffold_2G00131430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001347
Physical Location & Seq
Reverse (-)
68020829 .. 68022033
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131430.1

Sequence Viewer

Length: 153 bp
ATGACGGTGGCAATTGAGGTAGTGGAGGTCAGCTCTGACTCTTCTTTTAATTCTCCTTTGGTCCCTCAAAGCTCTTTTATAATAGCAGTTACTGTTGAATTTCTTTATACTCCCTATGCTCCTCCATATCATGATTTCTTACTTCCACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.55

Weight (kDa)

4.05

Isoelectric Point (pI)

76.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AcsI RAATTY 1 cut(s) 98
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 2 cut(s) 33, 72
AluI AGCT 2 cut(s) 33, 72
AlwNI CAGNNNCTG 1 cut(s) 92
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 61
AvaII GGWCC 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BseRI GAGGAG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 47
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 7, 94, 150
Bst6I CTCTTC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 92
CciI TCATGA 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 61
CviAII CATG 1 cut(s) 131
CviJI RGCY 2 cut(s) 33, 72
CviKI_1 RGCY 2 cut(s) 33, 72
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 61
FaeI CATG 1 cut(s) 134
FaiI YATR 5 cut(s) 80, 108, 117, 127, 132
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 130
Hin1II CATG 1 cut(s) 134
HinfI GANTC 1 cut(s) 38
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 7, 94, 150
Hsp92II CATG 1 cut(s) 134
LmnI GCTCC 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 1 cut(s) 33
MfeI CAATTG 1 cut(s) 12
MluCI AATT 3 cut(s) 12, 49, 98
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 4 cut(s) 10, 19, 75, 132
MseI TTAA 1 cut(s) 48
MunI CAATTG 1 cut(s) 12
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 63
PagI TCATGA 1 cut(s) 130
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PsiI TTATAA 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 92
SaqAI TTAA 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 32
SetI ASST 4 cut(s) 21, 30, 35, 74
SgeI CNNG 1 cut(s) 143
SinI GGWCC 1 cut(s) 61
Sse9I AATT 3 cut(s) 12, 49, 98
TaaI ACNGT 3 cut(s) 7, 94, 150
TasI AATT 3 cut(s) 12, 49, 98
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.