Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001921.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

22561 .. 23804

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001921.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgagatgtagttcatctttcttatcacacgtggccggccctgctgcagctataggacatcctgtggctagatctgcctttcaaagaccttgtgtaacctttgttgatactgctcataatctgcatgaggctttggcttcctctaatggcttccctagtcatactaggacaactcatcatcaggaggatatatatactacacaatccaatatttctcaagctttcactgttgctgttgaggagcctttgccgttagctattataccaccagataacaatcccaatcttcatatcaatgacgatgacctggcagctaatgaggaactggaagcctatcttaatgaagctattgatgagaatgtggaagtggaggagggaagctctgatactctctctttctctgcttcttctttagattttgacttgtcaataattacatctcatactgttgagtctatgatgaatcttttgcttaggtttattgctggtaaacctagttatcaatccgactgcgtcaactctgttcaggaggctgctcttgaactagcaatgtatgatcctaatttggaaaatcttgataattctgtggattgtaactatggcggtttctgctcttccatttcgaactccaagaaagggaggcagagaggatatggagaccatggatgcagaaccttcatcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

24.84

Weight (kDa)

4.58

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	1 cut(s)	551
AcoI	YGGCCR	1 cut(s)	33
AcvI	CACGTG	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	636
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	83, 542
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	6 cut(s)	50, 221, 257, 314, 347, 381
AluI	AGCT	6 cut(s)	50, 221, 257, 314, 347, 381
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	551
AoxI	GGCC	2 cut(s)	33, 37
ApeKI	GCWGC	4 cut(s)	44, 47, 311, 533
AspS9I	GGNCC	1 cut(s)	38
AsuII	TTCGAA	1 cut(s)	623
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbrPI	CACGTG	1 cut(s)	31
BbvI	GCAGC	4 cut(s)	31, 59, 323, 520
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	5 cut(s)	69, 156, 165, 495, 545
BfmI	CTRYAG	2 cut(s)	45, 51
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	4 cut(s)	45, 48, 312, 534
BlsI	GCNGC	4 cut(s)	46, 49, 313, 535
Bme1390I	CCNGG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	656
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
Bpu10I	CCTNAGC	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	623
BpuEI	CTTGAG	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	2 cut(s)	58, 671
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMI	GCAATG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	2 cut(s)	254, 386
BseXI	GCAGC	4 cut(s)	31, 59, 323, 520
BshFI	GGCC	2 cut(s)	35, 39
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	1 cut(s)	651
BsnI	GGCC	2 cut(s)	35, 39
Bso31I	GGTCTC	1 cut(s)	651
Bsp119I	TTCGAA	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	71, 556
Bsp19I	CCATGG	1 cut(s)	661
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	2 cut(s)	35, 39
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	1 cut(s)	551
BspQI	GCTCTTC	1 cut(s)	619
BspT104I	TTCGAA	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	2 cut(s)	71, 556
BssT1I	CCWWGG	1 cut(s)	661
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	229, 448
Bst6I	CTCTTC	1 cut(s)	619
BstBAI	YACGTR	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	661
BstF5I	GGATG	2 cut(s)	58, 671
BstKTI	GATC	2 cut(s)	74, 559
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	2 cut(s)	71, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 74, 609
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	45, 51
BstV1I	GCAGC	4 cut(s)	31, 59, 323, 520
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	35, 39
BtgI	CCRYGG	1 cut(s)	661
BtsCI	GGATG	2 cut(s)	58, 671
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	502
CviAII	CATG	2 cut(s)	125, 662
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	2 cut(s)	73, 558
DpnII	GATC	2 cut(s)	71, 556
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	619
EarI	CTCTTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	661
Eco31I	GGTCTC	1 cut(s)	651
Eco72I	CACGTG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	2 cut(s)	128, 665
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	2 cut(s)	124, 661
Fnu4HI	GCNGC	4 cut(s)	45, 48, 312, 534
FokI	GGATG	2 cut(s)	45, 678
FseI	GGCCGGCC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	45, 48, 312, 534
FspBI	CTAG	5 cut(s)	69, 156, 165, 495, 545
GluI	GCNGC	4 cut(s)	45, 48, 312, 534
HaeIII	GGCC	2 cut(s)	35, 39
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	502
Hin1II	CATG	2 cut(s)	128, 665
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	2 cut(s)	452, 463
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	491, 517
Hpy188I	TCNGA	2 cut(s)	385, 508
Hpy188III	TCNNGA	4 cut(s)	182, 527, 539, 575
Hpy8I	GTNNAC	2 cut(s)	491, 517
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	2 cut(s)	229, 448
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	47, 124, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 74, 609
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	128, 665
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	71, 556
LguI	GCTCTTC	1 cut(s)	619
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	4 cut(s)	31, 59, 323, 520
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	5 cut(s)	69, 156, 165, 495, 545
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	94, 593
MalI	GATC	2 cut(s)	73, 558
MboI	GATC	2 cut(s)	71, 556
MboII	GAAGA	4 cut(s)	278, 399, 606, 673
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	3 cut(s)	432, 562, 580
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	531
MroNI	GCCGGC	1 cut(s)	35
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	3 cut(s)	41, 74, 609
NaeI	GCCGGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	661
NdeII	GATC	2 cut(s)	71, 556
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	128, 665
NlaIV	GGNNCC	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	623
PciSI	GCTCTTC	1 cut(s)	619
PdiI	GCCGGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	463
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	46, 49, 313, 535
PleI	GAGTC	1 cut(s)	460
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	306
PspCI	CACGTG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	512
RigI	GGCCGGCC	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	619
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	4 cut(s)	45, 48, 312, 534
Sau3AI	GATC	2 cut(s)	71, 556
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	656
SfcI	CTRYAG	2 cut(s)	45, 51
SfuI	TTCGAA	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	432, 562, 580
SsiI	CCGC	1 cut(s)	603
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	5 cut(s)	69, 156, 165, 495, 545
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	2 cut(s)	229, 448
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	623
TasI	AATT	3 cut(s)	432, 562, 580
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	4 cut(s)	44, 47, 311, 533
TspDTI	ATGAA	4 cut(s)	278, 357, 476, 667
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	512
XspI	CTAG	5 cut(s)	69, 156, 165, 495, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.