Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

23726937 .. 23727293

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGTTCTCATCGTTTCACTCCATCTCGTGGGAGGCGATCGTGGTCTACACGGGCCTATCTCCGGCGACCTTTTTCAAGCTCCTGGCTCTGCTCTTCGCCGCTTACCATGTCCTTTCTGGGCTTTTTAGGCCGTCTAAGACCCACAACCACCCCAGGAGCTTGGAGGAGATGCAGCCTCTTTCACCGCCGGTCCAGCTCGGCGAGATCACCCCCGAGGAGCTCAAGCAGTATGACGGCTCCGATCCCAAGAAGGCTCTGCTCATGGCCATCAAGTGTCAGATCTATGACGTGTCTCAGAGTAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

103

Amino Acids

11.61

Weight (kDa)

6.39

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	2 cut(s)	102, 188
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	30, 64
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	84, 155
AluBI	AGCT	4 cut(s)	82, 162, 199, 223
AluI	AGCT	4 cut(s)	82, 162, 199, 223
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	55, 131, 267
ApeKI	GCWGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	55, 193
AsuHPI	GGTGA	2 cut(s)	177, 202
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	225
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	32, 278
BceAI	ACGGC	2 cut(s)	118, 253
BciT130I	CCWGG	2 cut(s)	86, 157
BcoDI	GTCTC	1 cut(s)	300
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	2 cut(s)	102, 176
BlsI	GCNGC	2 cut(s)	103, 177
Bme1390I	CCNGG	2 cut(s)	86, 157
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	55, 193
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	86, 157
BmsI	GCATC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	155, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 64
Bse118I	RCCGGY	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	86, 157
BseDI	CCNNGG	2 cut(s)	155, 216
BseLI	CCNNNNNNNGG	2 cut(s)	30, 64
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	2 cut(s)	182, 233
BseXI	GCAGC	1 cut(s)	187
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	57, 133, 269
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	65, 191
BslI	CCNNNNNNNGG	2 cut(s)	30, 64
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	57, 133, 269
BsoBI	CYCGRG	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	39, 207, 244, 282
BspACI	CCGC	2 cut(s)	102, 188
BspANI	GGCC	3 cut(s)	57, 133, 269
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	155, 216
BssMI	GATC	4 cut(s)	39, 207, 244, 282
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	2 cut(s)	86, 157
Bst6I	CTCTTC	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	138, 297
BstKTI	GATC	4 cut(s)	42, 210, 247, 285
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	4 cut(s)	39, 207, 244, 282
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 196
BstNI	CCWGG	2 cut(s)	86, 157
BstSCI	CCNGG	2 cut(s)	84, 155
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	57, 133, 269
BtrI	CACGTC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	55, 193
CviAII	CATG	2 cut(s)	110, 265
DdeI	CTNAG	2 cut(s)	138, 297
DpnI	GATC	4 cut(s)	41, 209, 246, 284
DpnII	GATC	4 cut(s)	39, 207, 244, 282
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	84, 155
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	2 cut(s)	113, 268
FaiI	YATR	4 cut(s)	111, 234, 266, 288
FatI	CATG	2 cut(s)	109, 264
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	102, 176
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	102, 176
GluI	GCNGC	2 cut(s)	102, 176
HaeIII	GGCC	3 cut(s)	57, 133, 269
HapII	CCGG	2 cut(s)	65, 191
Hin1II	CATG	2 cut(s)	113, 268
HpaII	CCGG	2 cut(s)	65, 191
HphI	GGTGA	2 cut(s)	177, 202
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	3 cut(s)	244, 282, 300
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 196
HpyF3I	CTNAG	2 cut(s)	138, 297
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	113, 268
Kzo9I	GATC	4 cut(s)	39, 207, 244, 282
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	4 cut(s)	87, 159, 220, 245
LpnPI	CCDG	8 cut(s)	71, 78, 98, 105, 142, 169, 204, 209
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	162
MaeII	ACGT	1 cut(s)	291
MalI	GATC	4 cut(s)	41, 209, 246, 284
MboI	GATC	4 cut(s)	39, 207, 244, 282
MboII	GAAGA	1 cut(s)	88
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	269
MnlI	CCTC	4 cut(s)	28, 160, 189, 211
Mox20I	TGGCCA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	2 cut(s)	65, 191
MspR9I	CCNGG	2 cut(s)	86, 157
MvaI	CCWGG	2 cut(s)	86, 157
MwoI	GCNNNNNNNGC	2 cut(s)	130, 196
NdeII	GATC	4 cut(s)	39, 207, 244, 282
NlaIII	CATG	2 cut(s)	113, 268
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	30
PkrI	GCNGC	2 cut(s)	103, 177
Ple19I	CGATCG	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	84, 155
PspGI	CCWGG	2 cut(s)	84, 155
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	55, 193
PsuI	RGATCY	1 cut(s)	282
PvuI	CGATCG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	2 cut(s)	102, 176
Sau3AI	GATC	4 cut(s)	39, 207, 244, 282
Sau96I	GGNCC	2 cut(s)	55, 193
ScrFI	CCNGG	2 cut(s)	86, 157
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	7 cut(s)	74, 84, 164, 201, 225, 294, 308
SfaNI	GCATC	1 cut(s)	162
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	2 cut(s)	102, 188
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	84, 155
TaiI	ACGT	1 cut(s)	294
TauI	GCSGC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.