Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

67196148 .. 67198343

Gene Structure 2196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCTCTGCAACTCTGGGAAACACTGAAGGACGCGATCGTGGCCTACACGGGCCTATCTCCGGCGATCTTCTTCACACTCTTGGCTCTGCTCGTGGCCACCTACCATATGCTTTCTGGGCTTTTTGGGCCATCCGATACCCACCAGCGGCCCAGCAGCTTGGAGGAGATGCAGCCTCTGCCGCCGACGGTCCAGCTCGACGAGATCACCGAGGAGGAGCTAAAGCAGGACGACGGCTCCGATCCCAAGAAGCCTCTGCCTAGGGCTATCAATACGGATTCAATTACTCCTTCCTCTTCTCCTCTCACCCGTTCACGTCCATACGATGTGTTTTTGAGTTTTAGAGAAGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 NB-ARC TIR

Protein Analysis

118

Amino Acids

13.1

Weight (kDa)

4.61

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	2 cut(s)	148, 182
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	61, 147
AgsI	TTSAA	1 cut(s)	282
AjiI	CACGTC	1 cut(s)	317
AluBI	AGCT	3 cut(s)	159, 196, 220
AluI	AGCT	3 cut(s)	159, 196, 220
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	5 cut(s)	42, 52, 96, 128, 149
ApeKI	GCWGC	2 cut(s)	156, 172
AspA2I	CCTAGG	1 cut(s)	260
AspS9I	GGNCC	4 cut(s)	52, 128, 150, 190
AsuHPI	GGTGA	2 cut(s)	199, 298
AvaII	GGWCC	1 cut(s)	190
AvrII	CCTAGG	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	98
BauI	CACGAG	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	168, 184
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	261
BisI	GCNGC	4 cut(s)	149, 157, 173, 182
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	4 cut(s)	150, 158, 174, 183
Bme18I	GGWCC	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	52, 128, 150, 190
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	210, 260
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 147
BseDI	CCNNGG	2 cut(s)	210, 260
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	61, 147
BseRI	GAGGAG	4 cut(s)	179, 227, 230, 291
BseXI	GCAGC	2 cut(s)	168, 184
BseYI	CCCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	44, 54, 98, 130, 151
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	61, 147
BsnI	GGCC	5 cut(s)	44, 54, 98, 130, 151
Bsp143I	GATC	4 cut(s)	36, 66, 204, 241
BspACI	CCGC	2 cut(s)	148, 182
BspANI	GGCC	5 cut(s)	44, 54, 98, 130, 151
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	210, 260
BssMI	GATC	4 cut(s)	36, 66, 204, 241
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	4 cut(s)	39, 69, 207, 244
BstMBI	GATC	4 cut(s)	36, 66, 204, 241
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 118, 127, 178, 181
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	168, 184
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	5 cut(s)	44, 54, 98, 130, 151
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr13I	GGNCC	4 cut(s)	52, 128, 150, 190
CseI	GACGC	1 cut(s)	41
DpnI	GATC	4 cut(s)	38, 68, 206, 243
DpnII	GATC	4 cut(s)	36, 66, 204, 241
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaiI	YATR	3 cut(s)	108, 110, 322
FauNDI	CATATG	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	149, 157, 173, 182
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	4 cut(s)	149, 157, 173, 182
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	4 cut(s)	149, 157, 173, 182
GsaI	CCCAGC	1 cut(s)	156
HaeIII	GGCC	5 cut(s)	44, 54, 98, 130, 151
HapII	CCGG	1 cut(s)	62
HgaI	GACGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	199, 298
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	136, 241
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	3 cut(s)	190, 203, 236
HpyAV	CCTTC	3 cut(s)	22, 300, 341
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	10, 172
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 118, 127, 178, 181
HpySE526I	ACGT	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	36, 66, 204, 241
LmnI	GCTCC	2 cut(s)	217, 242
LpnPI	CCDG	6 cut(s)	75, 102, 158, 166, 206, 212
Lsp1109I	GCAGC	2 cut(s)	168, 184
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	316
MalI	GATC	4 cut(s)	38, 68, 206, 243
MboI	GATC	4 cut(s)	36, 66, 204, 241
MboII	GAAGA	3 cut(s)	61, 64, 288
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	2 cut(s)	282, 352
MluNI	TGGCCA	1 cut(s)	98
MnlI	CCTC	7 cut(s)	157, 186, 205, 208, 264, 304, 312
Mox20I	TGGCCA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	1 cut(s)	355
Msp20I	TGGCCA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	62
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	5 cut(s)	41, 118, 127, 178, 181
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	4 cut(s)	36, 66, 204, 241
NlaIV	GGNNCC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 237
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	150, 158, 174, 183
Ple19I	CGATCG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	4 cut(s)	52, 128, 150, 190
PstNI	CAGNNNCTG	1 cut(s)	178
PvuI	CGATCG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	355
SatI	GCNGC	4 cut(s)	149, 157, 173, 182
Sau3AI	GATC	4 cut(s)	36, 66, 204, 241
Sau96I	GGNCC	4 cut(s)	52, 128, 150, 190
SetI	ASST	5 cut(s)	104, 161, 198, 222, 319
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	2 cut(s)	282, 352
SsiI	CCGC	2 cut(s)	148, 182
SspMI	CTAG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	282, 352
TauI	GCSGC	2 cut(s)	151, 184
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	355
Tru9I	TTAA	1 cut(s)	355
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	156, 172
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.