Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001066.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

47587 .. 49306

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001066.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgttaggacctaccctggttaccgaccaaaaaagtgtggacgtcactcctttggcctggatcaagcgtcgacggggctgcgtggcttgccggagggaggctaggggtctgcgaagccagtctaccgttgggtggagtcgccggcgattggtttgcagcgctgcccagaaacatgcaaccccgacctcctctgacctcgattgctgcccacaagtcgtctgggatgcctccggcctcagtccggcaagcccttcgccgccgtcgctgctgcgtcgacgtccgcacttaacaatagaggcgatcgtggtctacactggtctatctccagcgaccttcttcacactcctggctctgatctttgctgcttaccatgtcttttctaggatttttgggccgtttgagacccaccaccgccccaagaacttggaggagatgcagcatctgctgccgctggtccaggtaggcaagatcaccgccgaggatctgaagcagtacgacgactctgatcccaacaagcctctgctcatggccatcaagtctcggatctattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

184

Amino Acids

20.65

Weight (kDa)

9.67

Isoelectric Point (pI)

71.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	45, 280
AccI	GTMKAC	4 cut(s)	70, 122, 274, 309
AciI	CCGC	5 cut(s)	257, 281, 412, 449, 474
AclWI	GGATC	4 cut(s)	68, 489, 500, 551
AcoI	YGGCCR	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	2 cut(s)	42, 277
AfaI	GTAC	1 cut(s)	494
AfeI	AGCGCT	1 cut(s)	160
AfiI	CCNNNNNNNGG	4 cut(s)	97, 132, 148, 241
AjnI	CCWGG	4 cut(s)	15, 56, 345, 456
Alw26I	GTCTC	2 cut(s)	395, 543
AlwI	GGATC	4 cut(s)	68, 489, 500, 551
AlwNI	CAGNNNCTG	1 cut(s)	442
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	4 cut(s)	54, 232, 392, 528
ApeKI	GCWGC	9 cut(s)	78, 156, 161, 204, 265, 268, 362, 436, 445
AspLEI	GCGC	1 cut(s)	161
AspS9I	GGNCC	3 cut(s)	8, 392, 454
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	2 cut(s)	8, 454
BalI	TGGCCA	1 cut(s)	530
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbvI	GCAGC	9 cut(s)	65, 148, 168, 191, 252, 255, 349, 432, 448
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	2 cut(s)	244, 379
BcgI	CGANNNNNNTGC	6 cut(s)	60, 94, 135, 169, 234, 268
BciT130I	CCWGG	4 cut(s)	17, 58, 347, 458
BcoDI	GTCTC	2 cut(s)	395, 543
BfaI	CTAG	2 cut(s)	102, 381
BfoI	RGCGCY	1 cut(s)	162
Bme1390I	CCNGG	4 cut(s)	17, 58, 347, 458
Bme18I	GGWCC	2 cut(s)	8, 454
BmgT120I	GGNCC	3 cut(s)	8, 392, 454
BmrFI	CCNGG	4 cut(s)	17, 58, 347, 458
BmsI	GCATC	3 cut(s)	214, 423, 448
BpmI	CTGGAG	1 cut(s)	309
BsaHI	GRCGYC	2 cut(s)	42, 277
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	15, 477
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 132, 148, 241
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	118, 319
BseBI	CCWGG	4 cut(s)	17, 58, 347, 458
BseDI	CCNNGG	2 cut(s)	15, 477
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	4 cut(s)	97, 132, 148, 241
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	118, 319
BseRI	GAGGAG	2 cut(s)	178, 443
BseXI	GCAGC	9 cut(s)	65, 148, 168, 191, 252, 255, 349, 432, 448
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	56, 234, 394, 530
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	4 cut(s)	91, 142, 231, 242
BslI	CCNNNNNNNGG	4 cut(s)	97, 132, 148, 241
BsmAI	GTCTC	2 cut(s)	395, 543
BsnI	GGCC	4 cut(s)	56, 234, 394, 530
Bso31I	GGTCTC	1 cut(s)	395
Bsp143I	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
BspACI	CCGC	5 cut(s)	257, 281, 412, 449, 474
BspANI	GGCC	4 cut(s)	56, 234, 394, 530
BspCNI	CTCAG	1 cut(s)	249
BspPI	GGATC	4 cut(s)	68, 489, 500, 551
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	118, 319
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	15, 477
BssMI	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
BssNI	GRCGYC	2 cut(s)	42, 277
Bst2UI	CCWGG	4 cut(s)	17, 58, 347, 458
Bst4CI	ACNGT	1 cut(s)	127
BstACI	GRCGYC	2 cut(s)	42, 277
BstAPI	GCANNNNNTGC	2 cut(s)	442, 445
BstC8I	GCNNGC	3 cut(s)	88, 143, 247
BstDEI	CTNAG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	7 cut(s)	63, 303, 357, 471, 484, 508, 546
BstMAI	GTCTC	2 cut(s)	395, 543
BstMBI	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 262, 265, 442, 445
BstNI	CCWGG	4 cut(s)	17, 58, 347, 458
BstNSI	RCATGY	1 cut(s)	176
BstPI	GGTNACC	1 cut(s)	19
BstSCI	CCNGG	4 cut(s)	15, 56, 345, 456
BstV1I	GCAGC	9 cut(s)	65, 148, 168, 191, 252, 255, 349, 432, 448
BstX2I	RGATCY	2 cut(s)	481, 543
BstXI	CCANNNNNNTGG	1 cut(s)	424
BstYI	RGATCY	2 cut(s)	481, 543
BsuRI	GGCC	4 cut(s)	56, 234, 394, 530
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	88, 143, 247
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	3 cut(s)	8, 392, 454
CseI	GACGC	2 cut(s)	56, 260
Csp6I	GTAC	1 cut(s)	493
CviAII	CATG	3 cut(s)	173, 371, 526
CviQI	GTAC	1 cut(s)	493
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	7 cut(s)	62, 302, 356, 470, 483, 507, 545
DpnII	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
EaeI	YGGCCR	1 cut(s)	528
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	8, 454
Eco47III	AGCGCT	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	19
EcoO109I	RGGNCCY	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	19
EcoRII	CCWGG	4 cut(s)	15, 56, 345, 456
FaeI	CATG	3 cut(s)	176, 374, 529
FaiI	YATR	3 cut(s)	174, 372, 527
FatI	CATG	3 cut(s)	172, 370, 525
FblI	GTMKAC	4 cut(s)	70, 122, 274, 309
FokI	GGATG	1 cut(s)	236
FspBI	CTAG	2 cut(s)	102, 381
GlaI	GCGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	4 cut(s)	56, 234, 394, 530
HapII	CCGG	4 cut(s)	91, 142, 231, 242
HgaI	GACGC	2 cut(s)	56, 260
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	42, 277
Hin1II	CATG	3 cut(s)	176, 374, 529
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HincII	GTYRAC	2 cut(s)	71, 275
HindII	GTYRAC	2 cut(s)	71, 275
HinfI	GANTC	2 cut(s)	136, 500
HpaII	CCGG	4 cut(s)	91, 142, 231, 242
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	5 cut(s)	40, 71, 123, 275, 310
Hpy188I	TCNGA	5 cut(s)	193, 354, 486, 505, 543
Hpy8I	GTNNAC	5 cut(s)	40, 71, 123, 275, 310
Hpy99I	CGWCG	6 cut(s)	72, 75, 265, 276, 279, 500
HpyAV	CCTTC	2 cut(s)	261, 343
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	42, 277
HpyCH4V	TGCA	3 cut(s)	156, 176, 436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 262, 265, 442, 445
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	2 cut(s)	42, 277
Hsp92I	GRCGYC	2 cut(s)	42, 277
Hsp92II	CATG	3 cut(s)	176, 374, 529
HspAI	GCGC	1 cut(s)	159
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
Lsp1109I	GCAGC	9 cut(s)	65, 148, 168, 191, 252, 255, 349, 432, 448
LweI	GCATC	3 cut(s)	214, 423, 448
MaeI	CTAG	2 cut(s)	102, 381
MaeII	ACGT	2 cut(s)	42, 277
MaeIII	GTNAC	2 cut(s)	19, 43
MalI	GATC	7 cut(s)	62, 302, 356, 470, 483, 507, 545
MboI	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
MboII	GAAGA	1 cut(s)	328
MflI	RGATCY	2 cut(s)	481, 543
MlsI	TGGCCA	1 cut(s)	530
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	145, 494
Mox20I	TGGCCA	1 cut(s)	530
MreI	CGCCGGCG	1 cut(s)	141
MroNI	GCCGGC	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	4 cut(s)	91, 142, 231, 242
MspR9I	CCNGG	4 cut(s)	17, 58, 347, 458
MvaI	CCWGG	4 cut(s)	17, 58, 347, 458
MwoI	GCNNNNNNNGC	5 cut(s)	87, 262, 265, 442, 445
NaeI	GCCGGC	1 cut(s)	143
NdeII	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	176, 374, 529
NmeAIII	GCCGAG	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	176
PdiI	GCCGGC	1 cut(s)	143
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	2 cut(s)	144, 494
PpsI	GAGTC	2 cut(s)	144, 494
PpuMI	RGGWCCY	1 cut(s)	8
Psp5II	RGGWCCY	1 cut(s)	8
Psp6I	CCWGG	4 cut(s)	15, 56, 345, 456
PspEI	GGTNACC	1 cut(s)	19
PspGI	CCWGG	4 cut(s)	15, 56, 345, 456
PspPI	GGNCC	3 cut(s)	8, 392, 454
PspPPI	RGGWCCY	1 cut(s)	8
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	481, 543
PvuI	CGATCG	1 cut(s)	303
RsaI	GTAC	1 cut(s)	494
RsaNI	GTAC	1 cut(s)	493
SalI	GTCGAC	2 cut(s)	69, 273
SaqAI	TTAA	1 cut(s)	287
Sau3AI	GATC	7 cut(s)	60, 300, 354, 468, 481, 505, 543
Sau96I	GGNCC	3 cut(s)	8, 392, 454
SchI	GAGTC	2 cut(s)	145, 494
ScrFI	CCNGG	4 cut(s)	17, 58, 347, 458
SetI	ASST	7 cut(s)	13, 45, 188, 198, 280, 335, 462
SfaNI	GCATC	3 cut(s)	214, 423, 448
SgrAI	CRCCGGYG	1 cut(s)	141
SgrDI	CGTCGACG	2 cut(s)	69, 273
SinI	GGWCC	2 cut(s)	8, 454
SsiI	CCGC	5 cut(s)	257, 281, 412, 449, 474
SspMI	CTAG	2 cut(s)	102, 381
StyD4I	CCNGG	4 cut(s)	15, 56, 345, 456
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	45, 280
TaqI	TCGA	3 cut(s)	70, 198, 274
TauI	GCSGC	2 cut(s)	259, 451
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	9 cut(s)	78, 156, 161, 204, 265, 268, 362, 436, 445
Tsp45I	GTSAC	1 cut(s)	43
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	8, 454
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 216
XmiI	GTMKAC	4 cut(s)	70, 122, 274, 309
XspI	CTAG	2 cut(s)	102, 381
ZraI	GACGTC	2 cut(s)	43, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.