Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000159.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

254884 .. 255156

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000159.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggctctgcaactcagggaaacactgaaggaggcaattgtagtctacacgggcctatctccggcgaccttcttcacactcctggctctgctctttgccgcttaccatgtcattaatgagctttttgggtcgtccgagacccaccacctccccagaaacttggaggagatgcagcctctgccgcagtcggtccagctatgcaagatcaccaccaaagactccaatcctaagaagcctctgctcatggccatcaagtctcagatctattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

90

Amino Acids

10.23

Weight (kDa)

7.91

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	99, 182
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	2 cut(s)	121, 196
AluI	AGCT	2 cut(s)	121, 196
Alw26I	GTCTC	2 cut(s)	131, 261
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	2 cut(s)	52, 246
ApeKI	GCWGC	1 cut(s)	172
AseI	ATTAAT	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	52, 190
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	2 cut(s)	131, 261
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	3 cut(s)	99, 173, 182
BlsI	GCNGC	3 cut(s)	100, 174, 183
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	52, 190
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	28, 272
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	54, 248
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	2 cut(s)	131, 261
BsnI	GGCC	2 cut(s)	54, 248
Bso31I	GGTCTC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	204, 261
BspACI	CCGC	2 cut(s)	99, 182
BspANI	GGCC	2 cut(s)	54, 248
BspCNI	CTCAG	2 cut(s)	27, 271
BspTNI	GGTCTC	1 cut(s)	131
BssMI	GATC	2 cut(s)	204, 261
Bst2UI	CCWGG	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstDEI	CTNAG	3 cut(s)	14, 228, 258
BstKTI	GATC	2 cut(s)	207, 264
BstMAI	GTCTC	2 cut(s)	131, 261
BstMBI	GATC	2 cut(s)	204, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 181
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	261
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	54, 248
BtsIMutI	CAGTG	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	52, 190
CviAII	CATG	2 cut(s)	107, 244
CviJI	RGCY	8 cut(s)	5, 54, 86, 121, 175, 196, 235, 248
CviKI_1	RGCY	8 cut(s)	5, 54, 86, 121, 175, 196, 235, 248
DdeI	CTNAG	3 cut(s)	14, 228, 258
DpnI	GATC	2 cut(s)	206, 263
DpnII	GATC	2 cut(s)	204, 261
EaeI	YGGCCR	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	110, 247
FaiI	YATR	3 cut(s)	108, 199, 245
FatI	CATG	2 cut(s)	106, 243
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	99, 173, 182
Fsp4HI	GCNGC	3 cut(s)	99, 173, 182
GluI	GCNGC	3 cut(s)	99, 173, 182
HaeIII	GGCC	2 cut(s)	54, 248
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	2 cut(s)	110, 247
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	136, 261
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	22, 79
HpyCH4V	TGCA	3 cut(s)	10, 172, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 181
HpyF3I	CTNAG	3 cut(s)	14, 228, 258
Hsp92II	CATG	2 cut(s)	110, 247
Kzo9I	GATC	2 cut(s)	204, 261
LpnPI	CCDG	5 cut(s)	68, 75, 95, 166, 206
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	159
MalI	GATC	2 cut(s)	206, 263
MboI	GATC	2 cut(s)	204, 261
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	1 cut(s)	36
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	5 cut(s)	25, 157, 158, 186, 246
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	248
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	178, 181
NdeII	GATC	2 cut(s)	204, 261
NlaIII	CATG	2 cut(s)	110, 247
PkrI	GCNGC	3 cut(s)	100, 174, 183
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	52, 190
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	99, 173, 182
Sau3AI	GATC	2 cut(s)	204, 261
Sau96I	GGNCC	2 cut(s)	52, 190
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	71, 123, 150, 198
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	99, 182
StyD4I	CCNGG	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	1 cut(s)	36
TauI	GCSGC	2 cut(s)	101, 184
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	190
VspI	ATTAAT	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.