Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013258.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

9241 .. 10384

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013258.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgacaagtcttcaggctgttgtcgtgggacagaccggtctaacttacaaggggagcggccgggttgaggggcgtagacgggatcatgctgggctgtccgagacccaccatcgccccaagaacttggaggagacgcagcctctgttgtcgctggtccagctaggcgagatctccactgaggagctgaagcaatacgacggctctgatcccaacaagcctctgctcatggccatcaagtctcagatctattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

84

Amino Acids

9.39

Weight (kDa)

6.83

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	36
AccBSI	CCGCTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	2 cut(s)	90, 200
AcoI	YGGCCR	2 cut(s)	58, 228
AcuI	CTGAAG	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	35
AluBI	AGCT	2 cut(s)	160, 184
AluI	AGCT	2 cut(s)	160, 184
Alw26I	GTCTC	3 cut(s)	95, 125, 243
AlwI	GGATC	2 cut(s)	90, 200
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	2 cut(s)	58, 228
ApeKI	GCWGC	1 cut(s)	136
AsiGI	ACCGGT	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	154
AsuC2I	CCSGG	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	2
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	117, 239
BceAI	ACGGC	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	3 cut(s)	95, 125, 243
BfaI	CTAG	1 cut(s)	161
BglII	AGATCT	2 cut(s)	168, 243
BisI	GCNGC	2 cut(s)	58, 137
BlsI	GCNGC	2 cut(s)	59, 138
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	2
BpuMI	CCSGG	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	95
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	168, 254
BseRI	GAGGAG	2 cut(s)	143, 194
BseX3I	CGGCCG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	60, 230
BshTI	ACCGGT	1 cut(s)	35
BsiEI	CGRYCG	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	36, 61
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	3 cut(s)	95, 125, 243
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	60, 230
Bso31I	GGTCTC	1 cut(s)	95
Bsp143I	GATC	4 cut(s)	82, 168, 205, 243
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	60, 230
BspCNI	CTCAG	2 cut(s)	169, 253
BspPI	GGATC	2 cut(s)	90, 200
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	4 cut(s)	82, 168, 205, 243
BstDEI	CTNAG	2 cut(s)	177, 240
BstKTI	GATC	4 cut(s)	85, 171, 208, 246
BstMAI	GTCTC	3 cut(s)	95, 125, 243
BstMBI	GATC	4 cut(s)	82, 168, 205, 243
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	2
BstX2I	RGATCY	2 cut(s)	168, 243
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	2 cut(s)	168, 243
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	60, 230
BtgZI	GCGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	142
CspAI	ACCGGT	1 cut(s)	35
CviAII	CATG	2 cut(s)	86, 226
CviJI	RGCY	9 cut(s)	17, 60, 94, 139, 160, 184, 201, 217, 230
CviKI_1	RGCY	9 cut(s)	17, 60, 94, 139, 160, 184, 201, 217, 230
DdeI	CTNAG	2 cut(s)	177, 240
DpnI	GATC	4 cut(s)	84, 170, 207, 245
DpnII	GATC	4 cut(s)	82, 168, 205, 243
DrdI	GACNNNNNNGTC	1 cut(s)	36
DseDI	GACNNNNNNGTC	1 cut(s)	36
EaeI	YGGCCR	2 cut(s)	58, 228
EagI	CGGCCG	1 cut(s)	58
EclXI	CGGCCG	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	154
Eco52I	CGGCCG	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	2 cut(s)	89, 229
FaiI	YATR	2 cut(s)	87, 227
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	2 cut(s)	85, 225
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	58, 137
Fsp4HI	GCNGC	2 cut(s)	58, 137
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	58, 137
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	60, 230
HapII	CCGG	2 cut(s)	36, 61
HgaI	GACGC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	89, 229
HpaII	CCGG	2 cut(s)	36, 61
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	3 cut(s)	100, 205, 243
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	177, 240
Hsp92II	CATG	2 cut(s)	89, 229
Kzo9I	GATC	4 cut(s)	82, 168, 205, 243
LmnI	GCTCC	2 cut(s)	54, 181
LpnPI	CCDG	5 cut(s)	49, 74, 75, 137, 170
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	161
MalI	GATC	4 cut(s)	84, 170, 207, 245
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	4 cut(s)	82, 168, 205, 243
MflI	RGATCY	2 cut(s)	168, 243
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	5 cut(s)	61, 121, 150, 172, 228
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	2 cut(s)	36, 61
MspR9I	CCNGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	4 cut(s)	82, 168, 205, 243
NlaIII	CATG	2 cut(s)	89, 229
PinAI	ACCGGT	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	59, 138
PspFI	CCCAGC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	154
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	2 cut(s)	168, 243
SatI	GCNGC	2 cut(s)	58, 137
Sau3AI	GATC	4 cut(s)	82, 168, 205, 243
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	2 cut(s)	162, 186
SinI	GGWCC	1 cut(s)	154
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	60
TauI	GCSGC	1 cut(s)	60
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	136
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.