Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

2011713 .. 2012177

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22079

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAGGGGCAGAATTGGTTTTTTATTGGCGATCGTGGTCTACACTGGTCTATCTCCAGCGACCTTCTTCACACTCCTGGCTCTAAACTTTGCTGCTTACCATGTCTTTTCTGGGATTTTTGGGCCGTTTGAGACCCACCACCGCCCCAAGAACTTGGAGGAGATGCAGCCTCTGCTGCCGCTGGACCAGCTAGGCAAGATCACCGCCGAGGATCTGAAGCAGTACGACAACTCTGATCCCAACAAGCCTCTGCTCATGGCCATCAAGTCTCGGATCTATTGTGAATTTACGATTTTCGATTTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

102

Amino Acids

11.55

Weight (kDa)

6.25

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	3 cut(s)	142, 179, 204
AclWI	GGATC	3 cut(s)	219, 230, 281
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	236
AfaI	GTAC	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	2 cut(s)	125, 273
AlwI	GGATC	3 cut(s)	219, 230, 281
AlwNI	CAGNNNCTG	1 cut(s)	172
AoxI	GGCC	2 cut(s)	122, 258
ApeKI	GCWGC	3 cut(s)	92, 166, 175
ApoI	RAATTY	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	122, 184
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	79, 162, 178
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	125, 273
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	4 cut(s)	93, 167, 176, 179
BlsI	GCNGC	4 cut(s)	94, 168, 177, 180
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	122, 184
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	79, 162, 178
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	124, 260
BsiEI	CGRYCG	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	125, 273
BsnI	GGCC	2 cut(s)	124, 260
Bso31I	GGTCTC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	30, 198, 211, 235, 273
BspACI	CCGC	3 cut(s)	142, 179, 204
BspANI	GGCC	2 cut(s)	124, 260
BspPI	GGATC	3 cut(s)	219, 230, 281
BspTNI	GGTCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	5 cut(s)	30, 198, 211, 235, 273
Bst2UI	CCWGG	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstKTI	GATC	5 cut(s)	33, 201, 214, 238, 276
BstMAI	GTCTC	2 cut(s)	125, 273
BstMBI	GATC	5 cut(s)	30, 198, 211, 235, 273
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 175, 187
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	79, 162, 178
BstX2I	RGATCY	2 cut(s)	211, 273
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	2 cut(s)	211, 273
BsuRI	GGCC	2 cut(s)	124, 260
BtsIMutI	CAGTG	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	122, 184
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	101, 256
CviJI	RGCY	6 cut(s)	80, 124, 169, 190, 247, 260
CviKI_1	RGCY	6 cut(s)	80, 124, 169, 190, 247, 260
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	5 cut(s)	32, 200, 213, 237, 275
DpnII	GATC	5 cut(s)	30, 198, 211, 235, 273
EaeI	YGGCCR	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	104, 259
FaiI	YATR	2 cut(s)	102, 257
FatI	CATG	2 cut(s)	100, 255
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	93, 167, 176, 179
Fsp4HI	GCNGC	4 cut(s)	93, 167, 176, 179
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	4 cut(s)	93, 167, 176, 179
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	124, 260
Hin1II	CATG	2 cut(s)	104, 259
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	3 cut(s)	216, 235, 273
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 175, 187
Hsp92II	CATG	2 cut(s)	104, 259
Kzo9I	GATC	5 cut(s)	30, 198, 211, 235, 273
LpnPI	CCDG	7 cut(s)	30, 62, 69, 89, 96, 167, 200
Lsp1109I	GCAGC	3 cut(s)	79, 162, 178
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	191
MalI	GATC	5 cut(s)	32, 200, 213, 237, 275
MboI	GATC	5 cut(s)	30, 198, 211, 235, 273
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	2 cut(s)	211, 273
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	2 cut(s)	12, 284
MluNI	TGGCCA	1 cut(s)	260
MnlI	CCTC	4 cut(s)	151, 180, 202, 258
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	260
MspA1I	CMGCKG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	172, 175, 187
NdeII	GATC	5 cut(s)	30, 198, 211, 235, 273
NlaIII	CATG	2 cut(s)	104, 259
NmeAIII	GCCGAG	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	94, 168, 177, 180
Ple19I	CGATCG	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	122, 184
PstNI	CAGNNNCTG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	211, 273
PvuI	CGATCG	1 cut(s)	33
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SatI	GCNGC	4 cut(s)	93, 167, 176, 179
Sau3AI	GATC	5 cut(s)	30, 198, 211, 235, 273
Sau96I	GGNCC	2 cut(s)	122, 184
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	2 cut(s)	65, 192
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	2 cut(s)	12, 284
SsiI	CCGC	3 cut(s)	142, 179, 204
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	12, 284
TauI	GCSGC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	3 cut(s)	92, 166, 175
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.