Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

82958318 .. 82963816

Gene Structure 5499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG537800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGCCTCTTCCGCCGCTGGTCCAGCTTGGCGAGATCACCGCCGAGGAGCTCAAGCAGTACGACGGCTCCGATCCCAAGAAGCCTCTGCTCATGGCCGTCAAGTCTCAGATCTATGACGGAATGCCAGCATCACCAAATCGAAACTCTCTACCGTCCAGACCTGCCCCAACACTGAATCGAAATGCCCCAACTCGTCCCAACTCCATGTTTACTCGCTCTGGTTCTCGAACCAATTTTCGACGTCCTGGAGTAACCTATGTTGATGCAACGCGTACTATCCATGACACTCTGGATTCTGGGTTCGGAGACCACTTTGAAGCAGCCGAGCAACACCCTCTGCCCATGCCATTGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

8.12

Isoelectric Point (pI)

64.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	172
AccII	CGCG	1 cut(s)	274
AciI	CCGC	3 cut(s)	14, 17, 42
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	2 cut(s)	62, 277
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	287, 319
AluBI	AGCT	2 cut(s)	28, 52
AluI	AGCT	2 cut(s)	28, 52
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	111, 303
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	4, 323
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	31, 126
AvaII	GGWCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	16, 335
BceAI	ACGGC	2 cut(s)	82, 83
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	111, 303
BfuAI	ACCTGC	1 cut(s)	172
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	3 cut(s)	5, 17, 324
BlsI	GCNGC	3 cut(s)	6, 18, 325
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	2 cut(s)	140, 256
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	16, 335
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	111, 303
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	36, 73, 111
BspACI	CCGC	3 cut(s)	14, 17, 42
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	36, 73, 111
BssNI	GRCGYC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	274
BstKTI	GATC	3 cut(s)	39, 76, 114
BstMAI	GTCTC	2 cut(s)	111, 303
BstMBI	GATC	3 cut(s)	36, 73, 111
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 25
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	16, 335
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	173
BveI	ACCTGC	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	61, 276
CviAII	CATG	4 cut(s)	94, 208, 284, 346
CviJI	RGCY	7 cut(s)	7, 28, 52, 69, 85, 98, 326
CviKI_1	RGCY	7 cut(s)	7, 28, 52, 69, 85, 98, 326
CviQI	GTAC	2 cut(s)	61, 276
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	38, 75, 113
DpnII	GATC	3 cut(s)	36, 73, 111
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	4 cut(s)	97, 211, 287, 349
FaiI	YATR	6 cut(s)	95, 117, 209, 261, 285, 347
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	4 cut(s)	93, 207, 283, 345
Fnu4HI	GCNGC	3 cut(s)	5, 17, 324
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	5, 17, 324
GluI	GCNGC	3 cut(s)	5, 17, 324
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	97, 211, 287, 349
HinfI	GANTC	2 cut(s)	178, 296
HphI	GGTGA	2 cut(s)	31, 126
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	3 cut(s)	73, 111, 308
Hpy188III	TCNNGA	3 cut(s)	159, 228, 293
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	68, 246
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	4, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 25
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	244
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	97, 211, 287, 349
Kzo9I	GATC	3 cut(s)	36, 73, 111
LmnI	GCTCC	2 cut(s)	49, 74
Lsp1109I	GCAGC	2 cut(s)	16, 335
LweI	GCATC	2 cut(s)	140, 256
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	38, 75, 113
MboI	GATC	3 cut(s)	36, 73, 111
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	1 cut(s)	235
MluI	ACGCGT	1 cut(s)	272
MnlI	CCTC	4 cut(s)	18, 40, 96, 348
MspA1I	CMGCKG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	13, 25
NdeII	GATC	3 cut(s)	36, 73, 111
NlaIII	CATG	4 cut(s)	97, 211, 287, 349
NlaIV	GGNNCC	1 cut(s)	70
NmeAIII	GCCGAG	2 cut(s)	70, 352
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	178, 296
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	6, 18, 325
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	2 cut(s)	62, 277
RsaNI	GTAC	2 cut(s)	61, 276
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	3 cut(s)	5, 17, 324
Sau3AI	GATC	3 cut(s)	36, 73, 111
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	5 cut(s)	30, 54, 166, 247, 260
SfaNI	GCATC	2 cut(s)	140, 256
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	3 cut(s)	14, 17, 42
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	4 cut(s)	142, 181, 229, 241
TasI	AATT	1 cut(s)	235
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	178, 296
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	4, 323
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	22
ZraI	GACGTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.