Rh7CG510800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001347
Physical Location & Seq
Forward (+)
68993996 .. 69004203
10208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG510800.1

Sequence Viewer

Length: 696 bp
ATGGAGAAGACTCATCCTTTCCCTGCTCGAGGACATCCTGTGGCTAGATCTGCCTTTCAAAGACCTTGTGTAACCTTTGTTGATACTGCTCATAATCTGCGTGAGGCTTTGGCTTCCTCTAATGGCTTTCCTAGTCATACTAGGACAACTCATCATTACGAGGATATATATACTACACAATCCAATATTTCTCAAGCTTTCACTGTTGCTGTTGAGGAGCCTCTGCCGTTAGCTATTATACCACCAGATAACAATCCCAATCTTCATATCGATGACGATGACCTGGTAGCTAATGAGGAACTGGAAGCCGATCTTAATGAAGCTATTGATAAGAATGTGGAAGTGGAGGAGGGAAGCTCTGATACTCTCTCTTTCTCTGCTTCTTCTTTAGATTTTGACTTGTCAATAATTACATCTGATATTGTTGAGTCTATGATGGTCTATAATCCTACTTCTGCTCTATACCCTGATTTTCTCAATACTTATCACCATAGCATTAATAGCTCTATCAACTCTGTTCAGGAGGCTGCTCTTGAACTAGCAATGTATGATCCTAATTTGGAAAATCTTGATAATTCTGTGGAAGTTGTAACTATGGTGGTTTCTGCTCTTCCATTTCGAACTCCAAGAAAGGGAGGCAGAGAGGATATGGAGACCATGGATGCAGAACCTTCATCTTCTAAACCACCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.51

Weight (kDa)

4.36

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 29, 632
AgsI TTSAA 2 cut(s) 59, 536
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 6 cut(s) 197, 233, 290, 323, 357, 504
AluI AGCT 6 cut(s) 197, 233, 290, 323, 357, 504
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 1 cut(s) 545
Ama87I CYCGRG 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 527
AseI ATTAAT 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 479
AsuII TTCGAA 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 514
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 4 cut(s) 45, 132, 141, 539
BglII AGATCT 1 cut(s) 47
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 284
BmeT110I CYCGRG 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 341, 373
Bpu14I TTCGAA 1 cut(s) 619
BpuEI CTTGAG 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 1 cut(s) 657
BsaWI WCCGGW 1 cut(s) 688
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 632
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 284
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 3 cut(s) 13, 34, 667
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 29, 632
BseMI GCAATG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 230, 362
BseXI GCAGC 1 cut(s) 514
BshVI ATCGAT 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 689
BslI CCNNNNNNNGG 2 cut(s) 29, 632
BsmAI GTCTC 1 cut(s) 647
Bso31I GGTCTC 1 cut(s) 647
BsoBI CYCGRG 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 619
Bsp143I GATC 3 cut(s) 47, 310, 550
Bsp19I CCATGG 1 cut(s) 657
BspDI ATCGAT 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 545
BspQI GCTCTTC 1 cut(s) 615
BspT104I TTCGAA 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 549
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 3 cut(s) 47, 310, 550
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 615
BstBI TTCGAA 1 cut(s) 619
BstDSI CCRYGG 1 cut(s) 657
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 3 cut(s) 13, 34, 667
BstKTI GATC 3 cut(s) 50, 313, 553
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 3 cut(s) 47, 310, 550
BstMWI GCNNNNNNNGC 2 cut(s) 50, 501
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
Bsu15I ATCGAT 1 cut(s) 270
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 657
BtsCI GGATG 3 cut(s) 13, 34, 667
BtsIMutI CAGTG 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 270
CsiI ACCWGGT 1 cut(s) 282
CviAII CATG 1 cut(s) 658
DpnI GATC 3 cut(s) 49, 312, 552
DpnII GATC 3 cut(s) 47, 310, 550
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 657
Eco31I GGTCTC 1 cut(s) 647
Eco88I CYCGRG 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 1 cut(s) 661
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 1 cut(s) 657
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 2 cut(s) 21, 674
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 4 cut(s) 45, 132, 141, 539
GluI GCNGC 1 cut(s) 528
HapII CCGG 1 cut(s) 689
Hin1II CATG 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 2 cut(s) 10, 428
HpaII CCGG 1 cut(s) 689
HphI GGTGA 1 cut(s) 479
Hpy188I TCNGA 2 cut(s) 361, 418
Hpy188III TCNNGA 3 cut(s) 521, 533, 569
HpyAV CCTTC 1 cut(s) 681
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 501
Hsp92II CATG 1 cut(s) 661
Kzo9I GATC 3 cut(s) 47, 310, 550
LguI GCTCTTC 1 cut(s) 615
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 8 cut(s) 36, 51, 258, 269, 287, 296, 480, 506
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 652
MabI ACCWGGT 1 cut(s) 282
MaeI CTAG 4 cut(s) 45, 132, 141, 539
MaeIII GTNAC 2 cut(s) 70, 589
MalI GATC 3 cut(s) 49, 312, 552
MboI GATC 3 cut(s) 47, 310, 550
MboII GAAGA 5 cut(s) 19, 254, 375, 602, 669
MflI RGATCY 1 cut(s) 47
MluCI AATT 3 cut(s) 408, 556, 574
MlyI GAGTC 2 cut(s) 4, 437
MseI TTAA 2 cut(s) 315, 498
MslI CAYNNNNRTG 2 cut(s) 270, 691
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 50, 501
NcoI CCATGG 1 cut(s) 657
NdeII GATC 3 cut(s) 47, 310, 550
NlaIII CATG 1 cut(s) 661
NlaIV GGNNCC 1 cut(s) 219
NspV TTCGAA 1 cut(s) 619
PaeR7I CTCGAG 1 cut(s) 27
PciSI GCTCTTC 1 cut(s) 615
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 2 cut(s) 4, 436
PpsI GAGTC 2 cut(s) 4, 436
PshBI ATTAAT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 219
PspXI VCTCGAGB 1 cut(s) 27
PsuI RGATCY 1 cut(s) 47
RseI CAYNNNNRTG 2 cut(s) 270, 691
SapI GCTCTTC 1 cut(s) 615
SaqAI TTAA 2 cut(s) 315, 498
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 3 cut(s) 47, 310, 550
SchI GAGTC 2 cut(s) 4, 437
ScrFI CCNGG 1 cut(s) 284
SexAI ACCWGGT 1 cut(s) 282
SfaNI GCATC 1 cut(s) 652
Sfr274I CTCGAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 27
SmiMI CAYNNNNRTG 2 cut(s) 270, 691
SmlI CTYRAG 2 cut(s) 27, 192
SmoI CTYRAG 2 cut(s) 27, 192
Sse9I AATT 3 cut(s) 408, 556, 574
SspI AATATT 1 cut(s) 187
SspMI CTAG 4 cut(s) 45, 132, 141, 539
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 3 cut(s) 28, 270, 619
TasI AATT 3 cut(s) 408, 556, 574
Tru1I TTAA 2 cut(s) 315, 498
Tru9I TTAA 2 cut(s) 315, 498
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 254, 333, 663
TspRI CASTG 1 cut(s) 208
VspI ATTAAT 1 cut(s) 498
XagI CCTNNNNNAGG 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 27
XspI CTAG 4 cut(s) 45, 132, 141, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.