Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

113192 .. 113945

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtgtttctttgctacaagattccgcaggtttggccaccgaggattgaggcgacgaagttttgatcggctgcggaggctgctctatgcatcgttgatggcgagggttgatatgaataaagaggtgaggaagaagaagaagaagatggagctctcatcgtttcactccatctcgtggtctgagacccacaaccgccccaggagcttggaggagatgcagcctctttcgtcaccggtccggctcggcgagatcacccccgaggagctcaagcagtacgacggctccgatcccaagaaggctctgctcatggccatcaaatctcaaatctatgacgtgtctcagagtatgtgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

117

Amino Acids

13.89

Weight (kDa)

10.32

Isoelectric Point (pI)

81.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB7I	CCANNNNNTGG	1 cut(s)	174
AciI	CCGC	3 cut(s)	25, 73, 193
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	2 cut(s)	34, 309
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	174
AflIII	ACRYGT	1 cut(s)	333
AgeI	ACCGGT	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	3 cut(s)	151, 204, 265
AluI	AGCT	3 cut(s)	151, 204, 265
Alw21I	GWGCWC	2 cut(s)	153, 267
Alw26I	GTCTC	2 cut(s)	176, 342
AlwI	GGATC	1 cut(s)	281
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	34, 309
ApeKI	GCWGC	3 cut(s)	70, 79, 217
AsiGI	ACCGGT	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	136, 222, 244
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	235
BalI	TGGCCA	2 cut(s)	36, 311
BanII	GRGCYC	2 cut(s)	153, 267
BauI	CACGAG	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	153, 267
BbvI	GCAGC	3 cut(s)	57, 66, 229
BccI	CCATC	4 cut(s)	91, 139, 176, 320
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	176, 342
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	3 cut(s)	71, 80, 218
BlsI	GCNGC	3 cut(s)	72, 81, 219
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	98, 204
BpuEI	CTTGAG	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	3 cut(s)	40, 197, 258
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	40, 197, 258
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	171, 353
BseRI	GAGGAG	2 cut(s)	224, 275
BseXI	GCAGC	3 cut(s)	57, 66, 229
BshFI	GGCC	2 cut(s)	36, 311
BshTI	ACCGGT	1 cut(s)	232
BsiHKAI	GWGCWC	2 cut(s)	153, 267
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	233, 238
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	2 cut(s)	176, 342
BsnI	GGCC	2 cut(s)	36, 311
Bso31I	GGTCTC	1 cut(s)	176
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	153, 267
Bsp143I	GATC	3 cut(s)	64, 249, 286
BspACI	CCGC	3 cut(s)	25, 73, 193
BspANI	GGCC	2 cut(s)	36, 311
BspCNI	CTCAG	2 cut(s)	172, 352
BspLI	GGNNCC	1 cut(s)	283
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	40, 197, 258
BssMI	GATC	3 cut(s)	64, 249, 286
BssSI	CACGAG	1 cut(s)	172
Bst2BI	CACGAG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	199
BstDEI	CTNAG	2 cut(s)	180, 339
BstKTI	GATC	3 cut(s)	67, 252, 289
BstMAI	GTCTC	2 cut(s)	176, 342
BstMBI	GATC	3 cut(s)	64, 249, 286
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 76, 79, 201
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	57, 66, 229
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	36, 311
BtrI	CACGTC	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	235
CpoI	CGGWCCG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	274
CspAI	ACCGGT	1 cut(s)	232
CspI	CGGWCCG	1 cut(s)	235
CviAII	CATG	1 cut(s)	307
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	180, 339
DpnI	GATC	3 cut(s)	66, 251, 288
DpnII	GATC	3 cut(s)	64, 249, 286
EaeI	YGGCCR	2 cut(s)	34, 309
Ecl136II	GAGCTC	2 cut(s)	151, 265
Eco24I	GRGCYC	2 cut(s)	153, 267
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	151, 265
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	2 cut(s)	151, 265
EcoRII	CCWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	153, 267
FaeI	CATG	1 cut(s)	310
FaiI	YATR	5 cut(s)	87, 113, 308, 330, 347
FatI	CATG	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	71, 80, 218
FriOI	GRGCYC	2 cut(s)	153, 267
Fsp4HI	GCNGC	3 cut(s)	71, 80, 218
GluI	GCNGC	3 cut(s)	71, 80, 218
HaeIII	GGCC	2 cut(s)	36, 311
HapII	CCGG	2 cut(s)	233, 238
Hin1II	CATG	1 cut(s)	310
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	2 cut(s)	233, 238
HphI	GGTGA	3 cut(s)	136, 222, 244
Hpy188I	TCNGA	3 cut(s)	181, 286, 342
Hpy99I	CGWCG	2 cut(s)	57, 281
HpyAV	CCTTC	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	89, 217
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 76, 79, 201
HpyF3I	CTNAG	2 cut(s)	180, 339
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	64, 249, 286
LmnI	GCTCC	4 cut(s)	148, 201, 262, 287
LpnPI	CCDG	5 cut(s)	13, 184, 211, 246, 251
Lsp1109I	GCAGC	3 cut(s)	57, 66, 229
LweI	GCATC	2 cut(s)	98, 204
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	3 cut(s)	66, 251, 288
MboI	GATC	3 cut(s)	64, 249, 286
MboII	GAAGA	5 cut(s)	142, 145, 148, 151, 154
MhlI	GDGCHC	2 cut(s)	153, 267
MlsI	TGGCCA	2 cut(s)	36, 311
MluNI	TGGCCA	2 cut(s)	36, 311
MnlI	CCTC	9 cut(s)	35, 42, 69, 96, 115, 120, 202, 231, 253
Mox20I	TGGCCA	2 cut(s)	36, 311
Mph1103I	ATGCAT	1 cut(s)	91
MscI	TGGCCA	2 cut(s)	36, 311
Msp20I	TGGCCA	2 cut(s)	36, 311
MspI	CCGG	2 cut(s)	233, 238
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	4 cut(s)	33, 76, 79, 201
NdeII	GATC	3 cut(s)	64, 249, 286
NlaIII	CATG	1 cut(s)	310
NlaIV	GGNNCC	1 cut(s)	283
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 282
PfeI	GAWTC	1 cut(s)	21
PflMI	CCANNNNNTGG	1 cut(s)	174
PinAI	ACCGGT	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	72, 81, 219
Psp124BI	GAGCTC	2 cut(s)	153, 267
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	235
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
Rsr2I	CGGWCCG	1 cut(s)	235
RsrII	CGGWCCG	1 cut(s)	235
SacI	GAGCTC	2 cut(s)	153, 267
SatI	GCNGC	3 cut(s)	71, 80, 218
Sau3AI	GATC	3 cut(s)	64, 249, 286
Sau96I	GGNCC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	153, 267
SetI	ASST	6 cut(s)	32, 126, 153, 206, 267, 336
SfaNI	GCATC	2 cut(s)	98, 204
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SsiI	CCGC	3 cut(s)	25, 73, 193
SstI	GAGCTC	2 cut(s)	153, 267
StyD4I	CCNGG	1 cut(s)	197
TaiI	ACGT	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	3 cut(s)	70, 79, 217
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	128
Van91I	CCANNNNNTGG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.