Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014150.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

32215 .. 33573

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014150.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggttgtgttggaggagaggaagagtttggcatgggtggtgatacccaaatcggagtttgctcggtggcgagtggggcccacgcgacgccactattggtggcacatggtagcgtgtgggggtcgattctgccctcctaatttgaaatggctgtgcaactctgggaacacaactaaaggaggtgatcatggtctacccacgggcctatcttcggctaccttcttcacactcctggctctgttctttgctgcttaccatgtcttttctgggatttttgggtcgtctgatacccaccaccggcccaagaacttggaggagatgcagcctctgctgccgctggtccagctaggtgagatcaccaccgaggatctgaagcaatacgatggctctgatccaaacaagcctctgctcatggccatcaagtctcagatgtattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

146

Amino Acids

16.61

Weight (kDa)

8.84

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	2 cut(s)	375, 386
AcoI	YGGCCR	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	211, 297
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	2 cut(s)	375, 386
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	4 cut(s)	77, 202, 299, 414
ApaI	GGGCCC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	248, 322, 331
AspS9I	GGNCC	5 cut(s)	77, 78, 202, 300, 340
AsuHPI	GGTGA	4 cut(s)	52, 194, 349, 362
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	235, 318, 334
BccI	CCATC	2 cut(s)	377, 425
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	4 cut(s)	249, 323, 332, 335
BlsI	GCNGC	4 cut(s)	250, 324, 333, 336
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	5 cut(s)	77, 78, 202, 300, 340
BmiI	GGNNCC	2 cut(s)	78, 79
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	88
BsaJI	CCNNGG	2 cut(s)	198, 363
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 297
Bse118I	RCCGGY	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	198, 363
BseLI	CCNNNNNNNGG	2 cut(s)	211, 297
BseMII	CTCAG	1 cut(s)	440
BseRI	GAGGAG	2 cut(s)	29, 329
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	235, 318, 334
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	4 cut(s)	79, 204, 301, 416
BsiSI	CCGG	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	211, 297
BsmAI	GTCTC	1 cut(s)	429
BsnI	GGCC	4 cut(s)	79, 204, 301, 416
Bsp120I	GGGCCC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	184, 354, 367, 391
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	4 cut(s)	79, 204, 301, 416
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	78, 79
BspPI	GGATC	2 cut(s)	375, 386
BsrFI	RCCGGY	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	198, 363
BssMI	GATC	4 cut(s)	184, 354, 367, 391
BssNI	GRCGYC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	426
BstDSI	CCRYGG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	4 cut(s)	187, 357, 370, 394
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	4 cut(s)	184, 354, 367, 391
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 328, 331, 343
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	3 cut(s)	235, 318, 334
BstX2I	RGATCY	1 cut(s)	367
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	4 cut(s)	79, 204, 301, 416
BtgI	CCRYGG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	5 cut(s)	77, 78, 202, 300, 340
CseI	GACGC	1 cut(s)	96
CviAII	CATG	5 cut(s)	33, 106, 188, 257, 412
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	4 cut(s)	186, 356, 369, 393
DpnII	GATC	4 cut(s)	184, 354, 367, 391
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	5 cut(s)	36, 109, 191, 260, 415
FaiI	YATR	5 cut(s)	34, 107, 189, 258, 413
FatI	CATG	5 cut(s)	32, 105, 187, 256, 411
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	249, 323, 332, 335
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	249, 323, 332, 335
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	4 cut(s)	249, 323, 332, 335
HaeIII	GGCC	4 cut(s)	79, 204, 301, 416
HapII	CCGG	1 cut(s)	298
HgaI	GACGC	1 cut(s)	96
Hin1I	GRCGYC	1 cut(s)	88
Hin1II	CATG	5 cut(s)	36, 109, 191, 260, 415
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	4 cut(s)	52, 194, 349, 362
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	5 cut(s)	55, 286, 372, 391, 429
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	229
HpyCH4V	TGCA	2 cut(s)	156, 322
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 328, 331, 343
HpyF3I	CTNAG	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	88
Hsp92II	CATG	5 cut(s)	36, 109, 191, 260, 415
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	184, 354, 367, 391
LpnPI	CCDG	7 cut(s)	147, 218, 245, 252, 311, 323, 356
Lsp1109I	GCAGC	3 cut(s)	235, 318, 334
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	1 cut(s)	347
MalI	GATC	4 cut(s)	186, 356, 369, 393
MboI	GATC	4 cut(s)	184, 354, 367, 391
MboII	GAAGA	3 cut(s)	34, 201, 214
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	1 cut(s)	139
MluNI	TGGCCA	1 cut(s)	416
MnlI	CCTC	8 cut(s)	7, 12, 144, 173, 307, 336, 358, 414
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	4 cut(s)	76, 328, 331, 343
NdeII	GATC	4 cut(s)	184, 354, 367, 391
NlaIII	CATG	5 cut(s)	36, 109, 191, 260, 415
NlaIV	GGNNCC	2 cut(s)	78, 79
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	250, 324, 333, 336
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	78, 79
PspOMI	GGGCCC	1 cut(s)	77
PspPI	GGNCC	5 cut(s)	77, 78, 202, 300, 340
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	367
SatI	GCNGC	4 cut(s)	249, 323, 332, 335
Sau3AI	GATC	4 cut(s)	184, 354, 367, 391
Sau96I	GGNCC	5 cut(s)	77, 78, 202, 300, 340
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	4 cut(s)	184, 221, 348, 352
SfaNI	GCATC	1 cut(s)	309
SinI	GGWCC	1 cut(s)	340
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	231
TaqI	TCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	139
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	126
TseI	GCWGC	3 cut(s)	248, 322, 331
VpaK11BI	GGWCC	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.