Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

28451427 .. 28456386

Gene Structure 4960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG299900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTCTGCAACTCTGGGAAACACTGAAGGAGGCGATCGTGGCCTACACAGGCCTATCTCCGGCGACCTTCTTCACATTCTTGGCTCTGCTCGTGACCGCTTACCATGTGCTTTCTGGGCTTTTTGGGCCGTCCCATACCCACCAGCGGCCCAGGAGCTTGGAGGAGATGCAGCCTCTGCCGCCGCCGGTCCAGCTCGGCGAGATCACCGAGGAGGAGCTGAAGCAATCAATGAAATGGCTGGTCACAGGATTGTTGATGCTGAAGGACCAAGTGTTGTCAATAAGATCTGTAGCATCACCACGCTTGCCTTGGTGCATCACTGGAATGACCACAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

6.82

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	99, 148, 182, 185
AcuI	CTGAAG	3 cut(s)	47, 242, 284
AfiI	CCNNNNNNNGG	2 cut(s)	61, 147
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	159, 196, 220
AluI	AGCT	3 cut(s)	159, 196, 220
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	4 cut(s)	42, 52, 128, 149
ApeKI	GCWGC	1 cut(s)	172
AspS9I	GGNCC	4 cut(s)	128, 150, 190, 268
AsuHPI	GGTGA	2 cut(s)	199, 291
AvaII	GGWCC	2 cut(s)	190, 268
BauI	CACGAG	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	4 cut(s)	149, 173, 182, 185
BlsI	GCNGC	4 cut(s)	150, 174, 183, 186
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	190, 268
BmgT120I	GGNCC	4 cut(s)	128, 150, 190, 268
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	4 cut(s)	159, 249, 305, 327
BsaJI	CCNNGG	3 cut(s)	152, 210, 311
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 147
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	152, 210, 311
BseLI	CCNNNNNNNGG	2 cut(s)	61, 147
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	179, 227, 230
BseXI	GCAGC	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	44, 54, 130, 151
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	62, 188
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	61, 147
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	44, 54, 130, 151
Bsp143I	GATC	3 cut(s)	36, 204, 287
BspACI	CCGC	4 cut(s)	99, 148, 182, 185
BspANI	GGCC	4 cut(s)	44, 54, 130, 151
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	152, 210, 311
BssMI	GATC	3 cut(s)	36, 204, 287
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	311
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	308
BstKTI	GATC	3 cut(s)	39, 207, 290
BstMBI	GATC	3 cut(s)	36, 204, 287
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 118, 127, 178, 181, 193
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	44, 54, 130, 151
BtsIMutI	CAGTG	2 cut(s)	23, 321
Cac8I	GCNNGC	1 cut(s)	308
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	128, 150, 190, 268
CviAII	CATG	1 cut(s)	107
DpnI	GATC	3 cut(s)	38, 206, 289
DpnII	GATC	3 cut(s)	36, 204, 287
Eco130I	CCWWGG	1 cut(s)	311
Eco147I	AGGCCT	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	190, 268
Eco57I	CTGAAG	3 cut(s)	47, 242, 284
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	108, 138
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	4 cut(s)	149, 173, 182, 185
Fsp4HI	GCNGC	4 cut(s)	149, 173, 182, 185
GluI	GCNGC	4 cut(s)	149, 173, 182, 185
HaeIII	GGCC	4 cut(s)	44, 54, 130, 151
HapII	CCGG	2 cut(s)	62, 188
Hin1II	CATG	1 cut(s)	110
HpaII	CCGG	2 cut(s)	62, 188
HphI	GGTGA	2 cut(s)	199, 291
Hpy188III	TCNNGA	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	22, 79, 259
HpyCH4V	TGCA	3 cut(s)	10, 172, 318
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 118, 127, 178, 181, 193
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	3 cut(s)	36, 204, 287
LmnI	GCTCC	2 cut(s)	156, 217
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	4 cut(s)	159, 249, 305, 327
MaeIII	GTNAC	2 cut(s)	94, 244
MalI	GATC	3 cut(s)	38, 206, 289
MboI	GATC	3 cut(s)	36, 204, 287
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	1 cut(s)	287
MnlI	CCTC	5 cut(s)	25, 157, 186, 205, 208
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	62, 188
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	6 cut(s)	41, 118, 127, 178, 181, 193
NdeII	GATC	3 cut(s)	36, 204, 287
NlaIII	CATG	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	94, 244
PceI	AGGCCT	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	150, 174, 183, 186
Ple19I	CGATCG	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspPI	GGNCC	4 cut(s)	128, 150, 190, 268
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	4 cut(s)	149, 173, 182, 185
Sau3AI	GATC	3 cut(s)	36, 204, 287
Sau96I	GGNCC	4 cut(s)	128, 150, 190, 268
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	4 cut(s)	71, 161, 198, 222
SfaNI	GCATC	4 cut(s)	159, 249, 305, 327
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	190, 268
SmiMI	CAYNNNNRTG	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	4 cut(s)	99, 148, 182, 185
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	311
TauI	GCSGC	3 cut(s)	151, 184, 187
TscAI	CASTG	2 cut(s)	30, 328
TseFI	GTSAC	2 cut(s)	94, 244
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	2 cut(s)	94, 244
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	30, 328
VpaK11BI	GGWCC	2 cut(s)	190, 268
XcmI	CCANNNNNNNNNTGG	2 cut(s)	113, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.