RchiOBHm_Chr4g0407701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001347
Physical Location & Seq
Reverse (-)
30053412 .. 30057636
4225 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37892

Sequence Viewer

Length: 474 bp
ATGACTCTTAGCTTCAATATAGAGGTCGTTCTGCTTCTGGACCGGTCTTACGTAGACCTTGAGTCACTTTTGTGGATGCAGCCAGAAATCTTAATGAGACCATGCATCATTCACCTTCACCATTCAATTCTGTCCCCAGATCGGACTGTTCCAACCCTGCCCACCTCTCAAGCCCTTGTAGTGGCTGTAGCAAAACGTCAACCCCTAGCTGTCATTCCTCCTCAGGATGATCCTCATCTCCACATCAATGATGAAGATTTGATAGTTGATGAAGACCTTGACCTAGAGTTTGAAGATGACCTTGAGGAAAACATTGAGGTGGTAGAGGGTCTGCTCTTCCTTTCCGTAGCCCCAGAAAGAGAGGAAGAGATGTTATTGAGAATATGGCAGAAGAACCATCTTCTTCTTATCTGCCTGAATGAGCATAATGTGTTGGAATTGTCGTGGCTGTTCACGACAGGGTTTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

18.12

Weight (kDa)

4.32

Isoelectric Point (pI)

63.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 141, 181
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 3 cut(s) 16, 126, 293
AhdI GACNNNNNGTC 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 70
AluBI AGCT 2 cut(s) 12, 209
AluI AGCT 2 cut(s) 12, 209
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AsiGI ACCGGT 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 104, 110
AvaII GGWCC 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 206, 284
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 40
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 40
BmsI GCATC 2 cut(s) 66, 114
BpiI GAAGAC 1 cut(s) 279
BpuEI CTTGAG 3 cut(s) 80, 153, 323
BsaAI YACGTR 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 181
Bse118I RCCGGY 1 cut(s) 42
Bse21I CCTNAGG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 234
BseGI GGATG 2 cut(s) 81, 232
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 141, 181
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 91
BshTI ACCGGT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 141, 181
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 139, 229
BspCNI CTCAG 1 cut(s) 235
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 2 cut(s) 139, 229
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 2 cut(s) 341, 360
BstBAI YACGTR 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 8, 222
BstF5I GGATG 2 cut(s) 81, 232
BstKTI GATC 2 cut(s) 142, 232
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 2 cut(s) 139, 229
BstSFI CTRYAG 1 cut(s) 186
BstSNI TACGTA 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 279
Bsu36I CCTNAGG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 81, 232
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 1 cut(s) 102
CviJI RGCY 7 cut(s) 12, 82, 173, 185, 209, 350, 448
CviKI_1 RGCY 7 cut(s) 12, 82, 173, 185, 209, 350, 448
DdeI CTNAG 2 cut(s) 8, 222
DpnI GATC 2 cut(s) 141, 231
DpnII GATC 2 cut(s) 139, 229
DriI GACNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 341, 360
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 2 cut(s) 341, 360
Eco105I TACGTA 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 107
FaeI CATG 1 cut(s) 105
FaiI YATR 4 cut(s) 20, 103, 385, 426
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 101
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 88, 239
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 2 cut(s) 206, 284
GluI GCNGC 1 cut(s) 80
HapII CCGG 1 cut(s) 43
Hin1II CATG 1 cut(s) 105
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HinfI GANTC 2 cut(s) 4, 62
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 104, 110
Hpy166II GTNNAC 3 cut(s) 55, 200, 453
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 38, 224, 454
Hpy8I GTNNAC 3 cut(s) 55, 200, 453
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 2 cut(s) 51, 196
HpyCH4V TGCA 2 cut(s) 79, 105
HpyF3I CTNAG 2 cut(s) 8, 222
HpySE526I ACGT 2 cut(s) 51, 196
Hsp92II CATG 1 cut(s) 105
Kzo9I GATC 2 cut(s) 139, 229
LguI GCTCTTC 1 cut(s) 341
LpnPI CCDG 9 cut(s) 23, 56, 96, 150, 170, 209, 366, 428, 444
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 2 cut(s) 66, 114
MaeI CTAG 2 cut(s) 206, 284
MaeII ACGT 2 cut(s) 51, 196
MaeIII GTNAC 1 cut(s) 63
MalI GATC 2 cut(s) 141, 231
MboI GATC 2 cut(s) 139, 229
MboII GAAGA 8 cut(s) 266, 284, 305, 328, 377, 392, 395, 403
MluCI AATT 2 cut(s) 126, 437
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 176, 414
MnlI CCTC 9 cut(s) 16, 175, 228, 231, 243, 298, 310, 319, 355
Mph1103I ATGCAT 1 cut(s) 107
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 3 cut(s) 70, 246, 317
MspI CCGG 1 cut(s) 43
NdeII GATC 2 cut(s) 139, 229
NlaIII CATG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 341
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 52
PspPI GGNCC 1 cut(s) 40
RseI CAYNNNNRTG 3 cut(s) 70, 246, 317
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 139, 229
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 71
SfaNI GCATC 2 cut(s) 66, 114
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 3 cut(s) 70, 246, 317
SmlI CTYRAG 3 cut(s) 59, 168, 302
SmoI CTYRAG 3 cut(s) 59, 168, 302
SnaBI TACGTA 1 cut(s) 52
Sse9I AATT 2 cut(s) 126, 437
SspMI CTAG 2 cut(s) 206, 284
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 2 cut(s) 54, 199
TasI AATT 2 cut(s) 126, 437
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 267, 285
TspGWI ACGGA 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 206, 284
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.