Rh5BG352700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
54612006 .. 54612408
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG352700.1

Sequence Viewer

Length: 327 bp
ATGCGTCTGAATTTCGGTCTTTCTCTATGTGAGGTCATGCGGTCTCTCACTCTGCTTTCCGTCGTGCAGGTGTATCATTTGTCGATGCTACTCTTCTCTGACTTGCACCCTTATATAGCTCCCATTCCTGAGCCGGCTCCGTTGGATGCTACTATCTCACCGCTCATTCCGGCAACTGTTCTTGAGGATGATTTGGCAGTGGATGAGGAACTCTATCCTGATTTAGAGAATGAAGAACTTGAGGAAGATGTTGAGGTTGTGGAAGTGAGTACTGACTCCTCCTCTTTTGTTTCTTCCATACTTTCAGATGTCTCTGTTCTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.89

Weight (kDa)

4.05

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
Acc36I ACCTGC 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 163
AciI CCGC 2 cut(s) 40, 161
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 1 cut(s) 271
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 48, 316
ApoI RAATTY 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 48, 316
BfuAI ACCTGC 1 cut(s) 58
BmcAI AGTACT 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 138
BmsI GCATC 2 cut(s) 75, 136
Bpu10I CCTNAGC 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 203, 260
BsaI GGTCTC 1 cut(s) 48
Bse118I RCCGGY 1 cut(s) 133
BseGI GGATG 3 cut(s) 151, 193, 208
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 2 cut(s) 268, 271
BsgI GTGCAG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 134, 170
BsmAI GTCTC 2 cut(s) 48, 316
Bso31I GGTCTC 1 cut(s) 48
BspACI CCGC 2 cut(s) 40, 161
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 138
BspMI ACCTGC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 151, 193, 208
BstMAI GTCTC 2 cut(s) 48, 316
BtsCI GGATG 3 cut(s) 151, 193, 208
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 133
Csp6I GTAC 1 cut(s) 270
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 119, 133, 137
CviKI_1 RGCY 3 cut(s) 119, 133, 137
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 48
FaeI CATG 1 cut(s) 40
FaiI YATR 5 cut(s) 28, 38, 114, 116, 299
FatI CATG 1 cut(s) 36
FokI GGATG 3 cut(s) 158, 200, 215
HapII CCGG 2 cut(s) 134, 170
Hin1II CATG 1 cut(s) 40
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 134, 170
HphI GGTGA 1 cut(s) 150
Hpy188I TCNGA 3 cut(s) 9, 100, 307
Hpy188III TCNNGA 3 cut(s) 128, 182, 218
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 67, 106
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 1 cut(s) 40
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 124, 142
LpnPI CCDG 5 cut(s) 53, 141, 147, 183, 231
LweI GCATC 2 cut(s) 75, 136
MbiI CCGCTC 1 cut(s) 163
MboII GAAGA 4 cut(s) 85, 245, 257, 285
MluCI AATT 1 cut(s) 10
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 7 cut(s) 25, 178, 199, 235, 247, 289, 292
MroNI GCCGGC 1 cut(s) 133
MseI TTAA 1 cut(s) 325
MspI CCGG 2 cut(s) 134, 170
NaeI GCCGGC 1 cut(s) 135
NgoMIV GCCGGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 58
PdiI GCCGGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 138
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 325
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 269
SetI ASST 4 cut(s) 36, 72, 121, 258
SfaNI GCATC 2 cut(s) 75, 136
SmlI CTYRAG 2 cut(s) 182, 239
SmoI CTYRAG 2 cut(s) 182, 239
Sse9I AATT 1 cut(s) 10
SsiI CCGC 2 cut(s) 40, 161
TaaI ACNGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 83
TaqII GACCGA 1 cut(s) 5
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 269
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 2 cut(s) 49, 129
TspRI CASTG 1 cut(s) 204
XapI RAATTY 1 cut(s) 10
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.