Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026716.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

616 .. 906

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026716.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ctgtgcaactctgggaacacaactaaaggaggtgatcatggtctacccacgggcctatcttcggctaccttcttcacactcctggctctgttctttgctgcttaccatgtcttttctgggatttttgggtcgtctgatacccaccaccggcccaagaacttggaggagatgcagcctctgctgccgctggtccagctaggtgagatcaccgccgaggatctgaagcaatacgacggctctaatccaaacaagcctctgctcatggccatcaagtctcagatgtattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

96

Amino Acids

10.53

Weight (kDa)

6.03

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	2 cut(s)	185, 210
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	61, 147
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	3 cut(s)	52, 149, 264
ApeKI	GCWGC	3 cut(s)	98, 172, 181
AspS9I	GGNCC	3 cut(s)	52, 150, 190
AsuHPI	GGTGA	3 cut(s)	44, 199, 212
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	266
BbvI	GCAGC	3 cut(s)	85, 168, 184
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	197
BisI	GCNGC	4 cut(s)	99, 173, 182, 185
BlsI	GCNGC	4 cut(s)	100, 174, 183, 186
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	52, 150, 190
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	48, 213
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 147
Bse118I	RCCGGY	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	2 cut(s)	48, 213
BseLI	CCNNNNNNNGG	2 cut(s)	61, 147
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	3 cut(s)	85, 168, 184
BshFI	GGCC	3 cut(s)	54, 151, 266
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	61, 147
BsmAI	GTCTC	1 cut(s)	279
BsnI	GGCC	3 cut(s)	54, 151, 266
Bsp143I	GATC	3 cut(s)	34, 204, 217
BspACI	CCGC	2 cut(s)	185, 210
BspANI	GGCC	3 cut(s)	54, 151, 266
BspCNI	CTCAG	1 cut(s)	289
BspPI	GGATC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	2 cut(s)	48, 213
BssMI	GATC	3 cut(s)	34, 204, 217
Bst2UI	CCWGG	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	37, 207, 220
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	3 cut(s)	34, 204, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 181, 193
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	85, 168, 184
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	54, 151, 266
BtgI	CCRYGG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	52, 150, 190
CviAII	CATG	3 cut(s)	38, 107, 262
CviJI	RGCY	9 cut(s)	54, 65, 86, 151, 175, 196, 237, 253, 266
CviKI_1	RGCY	9 cut(s)	54, 65, 86, 151, 175, 196, 237, 253, 266
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	3 cut(s)	36, 206, 219
DpnII	GATC	3 cut(s)	34, 204, 217
EaeI	YGGCCR	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	3 cut(s)	41, 110, 265
FaiI	YATR	3 cut(s)	39, 108, 263
FatI	CATG	3 cut(s)	37, 106, 261
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	4 cut(s)	99, 173, 182, 185
Fsp4HI	GCNGC	4 cut(s)	99, 173, 182, 185
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	4 cut(s)	99, 173, 182, 185
HaeIII	GGCC	3 cut(s)	54, 151, 266
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	3 cut(s)	41, 110, 265
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	3 cut(s)	44, 199, 212
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	136, 222, 279
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	6, 172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 181, 193
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	41, 110, 265
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	34, 204, 217
LpnPI	CCDG	6 cut(s)	68, 95, 102, 161, 173, 206
Lsp1109I	GCAGC	3 cut(s)	85, 168, 184
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	197
MalI	GATC	3 cut(s)	36, 206, 219
MboI	GATC	3 cut(s)	34, 204, 217
MboII	GAAGA	2 cut(s)	51, 64
MflI	RGATCY	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	5 cut(s)	23, 157, 186, 208, 264
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	178, 181, 193
NdeII	GATC	3 cut(s)	34, 204, 217
NlaIII	CATG	3 cut(s)	41, 110, 265
NmeAIII	GCCGAG	1 cut(s)	238
PkrI	GCNGC	4 cut(s)	100, 174, 183, 186
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	52, 150, 190
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	217
SatI	GCNGC	4 cut(s)	99, 173, 182, 185
Sau3AI	GATC	3 cut(s)	34, 204, 217
Sau96I	GGNCC	3 cut(s)	52, 150, 190
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	34, 71, 198, 202
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	190
SsiI	CCGC	2 cut(s)	185, 210
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	81
TauI	GCSGC	1 cut(s)	187
TseI	GCWGC	3 cut(s)	98, 172, 181
VpaK11BI	GGWCC	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.