Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

543164 .. 543589

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG002600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAACCCAAGATTATTCCACATCAGGACTCAAATCGTGTCTCCTGTGCTCCCACTAATCTACCTGAGGAAAATCTATTTATTTTATATCCGCGGTCCTCTGCAGAGGATGCCAACATCACCGAATCGAAACTCTCTACCGTCCAGACCTGCCCCAACACTGAATCGAAATTCCCTAACTCGTCCCAACTCCGTGTTTACTCGCTCTGGTTCTCGACCCAATTTTCGACATCCTGGTGTAACCTACGTCGATGCAATGCCTACTATCTATGACACTTTGGATTCTGGGTTCGGAGACCACTCTGAAGCAGCCGAGCAACACCCTCTGCCATCTGTTATTCTTGATGACTCCCATGCCTATGCCATTGAGGTAGCTGCTGCGGCTCCAGATCATGAGCCAGAACATGAGCCGTTTGTCCATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.89

Weight (kDa)

7.11

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	157
AccII	CGCG	1 cut(s)	93
AciI	CCGC	3 cut(s)	91, 93, 380
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	324
AjnI	CCWGG	1 cut(s)	232
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	2 cut(s)	45, 288
ApeKI	GCWGC	3 cut(s)	308, 374, 377
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	207, 239
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	320, 361, 364
BccI	CCATC	1 cut(s)	337
BceAI	ACGGC	1 cut(s)	394
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	45, 288
BfmI	CTRYAG	1 cut(s)	101
BfuAI	ACCTGC	1 cut(s)	157
BisI	GCNGC	4 cut(s)	309, 375, 378, 381
BlsI	GCNGC	4 cut(s)	310, 376, 379, 382
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	2 cut(s)	99, 241
BpmI	CTGGAG	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	91
Bse21I	CCTNAGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	3 cut(s)	114, 229, 418
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	320, 361, 364
Bsh1236I	CGCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	45, 288
BsmFI	GGGAC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	3 cut(s)	91, 93, 380
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	384
BspMAI	CTGCAG	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	91
BstF5I	GGATG	3 cut(s)	114, 229, 418
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	2 cut(s)	45, 288
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 380
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	3 cut(s)	320, 361, 364
Bsu36I	CCTNAGG	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	91
BtsCI	GGATG	3 cut(s)	114, 229, 418
BtsIMutI	CAGTG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	157
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	95
Cfr42I	CCGCGG	1 cut(s)	94
CviAII	CATG	3 cut(s)	353, 392, 404
CviJI	RGCY	5 cut(s)	311, 374, 383, 397, 409
CviKI_1	RGCY	5 cut(s)	311, 374, 383, 397, 409
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	3 cut(s)	356, 395, 407
FaiI	YATR	6 cut(s)	87, 270, 354, 360, 393, 405
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	352, 391, 403
Fnu4HI	GCNGC	4 cut(s)	309, 375, 378, 381
FokI	GGATG	3 cut(s)	121, 216, 405
Fsp4HI	GCNGC	4 cut(s)	309, 375, 378, 381
GluI	GCNGC	4 cut(s)	309, 375, 378, 381
GsuI	CTGGAG	1 cut(s)	369
Hin1II	CATG	3 cut(s)	356, 395, 407
HinfI	GANTC	5 cut(s)	28, 124, 163, 281, 347
HphI	GGTGA	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	293, 304
Hpy188III	TCNNGA	6 cut(s)	25, 144, 213, 341, 386, 392
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	103, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 380
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	356, 395, 407
KspI	CCGCGG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	2 cut(s)	54, 388
Lsp1109I	GCAGC	3 cut(s)	320, 361, 364
LweI	GCATC	2 cut(s)	99, 241
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	169, 220
MlyI	GAGTC	2 cut(s)	22, 341
MnlI	CCTC	5 cut(s)	60, 99, 108, 333, 361
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	2 cut(s)	234, 357
MspA1I	CMGCKG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	109, 380
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	356, 395, 407
NlaIV	GGNNCC	1 cut(s)	384
NmeAIII	GCCGAG	1 cut(s)	337
PagI	TCATGA	1 cut(s)	391
PfeI	GAWTC	3 cut(s)	124, 163, 281
PkrI	GCNGC	4 cut(s)	310, 376, 379, 382
PleI	GAGTC	2 cut(s)	22, 341
PpsI	GAGTC	2 cut(s)	22, 341
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	105
RseI	CAYNNNNRTG	2 cut(s)	234, 357
SacII	CCGCGG	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	4 cut(s)	309, 375, 378, 381
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	2 cut(s)	22, 341
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	66, 151, 245, 249, 372, 376
SfaNI	GCATC	2 cut(s)	99, 241
SfcI	CTRYAG	1 cut(s)	101
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	2 cut(s)	234, 357
Sse9I	AATT	2 cut(s)	169, 220
SsiI	CCGC	3 cut(s)	91, 93, 380
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	127, 166, 214, 226, 249
TasI	AATT	2 cut(s)	169, 220
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	124, 163, 281
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	1 cut(s)	165
TseI	GCWGC	3 cut(s)	308, 374, 377
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.