Rh6CG369200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001347
Physical Location & Seq
Forward (+)
55641794 .. 55642045
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG369200.1

Sequence Viewer

Length: 252 bp
ATGATCAACCCCAAATACTTCGCCTCCATAAGGCCGCCTCCAGCCTCGCCTCCTCGTTTTTCTGAAGGAGGCGATCCTGGTCTACACAAGCGTATCTCCGGCGACCTTCTTCACGCTCCTAGCTCTGCTCTTCGTTGCTTACCATGTCCTTTCTGGGCTTTTTGGGCCATCCGAGACCCACAACCGCCCCAGGAGCTTGGAGGAGATGTAACCTCTTCCGCAGCCGGTCCAGCTCGGCGAGATCACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.03

Weight (kDa)

9.38

Isoelectric Point (pI)

73.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AciI CCGC 4 cut(s) 35, 185, 219, 247
AclWI GGATC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 30
AjnI CCWGG 2 cut(s) 76, 189
AluBI AGCT 3 cut(s) 123, 196, 233
AluI AGCT 3 cut(s) 123, 196, 233
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 68
AoxI GGCC 2 cut(s) 32, 165
ApeKI GCWGC 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 165, 227
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 227
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 2 cut(s) 78, 191
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 120
BisI GCNGC 2 cut(s) 35, 222
BlsI GCNGC 2 cut(s) 36, 223
Bme1390I CCNGG 2 cut(s) 78, 191
Bme18I GGWCC 1 cut(s) 227
BmgT120I GGNCC 2 cut(s) 165, 227
BmrFI CCNGG 2 cut(s) 78, 191
BpmI CTGGAG 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 189
BsaXI ACNNNNNCTCC 4 cut(s) 8, 38, 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 224
BseBI CCWGG 2 cut(s) 78, 191
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 30
BseRI GAGGAG 2 cut(s) 42, 216
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 2 cut(s) 34, 167
BsiSI CCGG 2 cut(s) 99, 225
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 2 cut(s) 34, 167
Bso31I GGTCTC 1 cut(s) 168
Bsp143I GATC 3 cut(s) 3, 73, 241
BspACI CCGC 4 cut(s) 35, 185, 219, 247
BspANI GGCC 2 cut(s) 34, 167
BspPI GGATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 3 cut(s) 3, 73, 241
Bst2UI CCWGG 2 cut(s) 78, 191
Bst6I CTCTTC 2 cut(s) 135, 220
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 3 cut(s) 6, 76, 244
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 3 cut(s) 3, 73, 241
BstMWI GCNNNNNNNGC 3 cut(s) 164, 193, 230
BstNI CCWGG 2 cut(s) 78, 191
BstSCI CCNGG 2 cut(s) 76, 189
BstV1I GCAGC 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 197
BsuRI GGCC 2 cut(s) 34, 167
BtsCI GGATG 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 165, 227
CviAII CATG 1 cut(s) 144
CviJI RGCY 8 cut(s) 34, 44, 123, 158, 167, 196, 224, 233
CviKI_1 RGCY 8 cut(s) 34, 44, 123, 158, 167, 196, 224, 233
DpnI GATC 3 cut(s) 5, 75, 243
DpnII GATC 3 cut(s) 3, 73, 241
Eam1104I CTCTTC 2 cut(s) 135, 220
EarI CTCTTC 2 cut(s) 135, 220
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 76, 189
FaeI CATG 1 cut(s) 147
FaiI YATR 2 cut(s) 29, 145
FatI CATG 1 cut(s) 143
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 35, 222
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 35, 222
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 35, 222
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 2 cut(s) 34, 167
HapII CCGG 2 cut(s) 99, 225
Hin1II CATG 1 cut(s) 147
HpaII CCGG 2 cut(s) 99, 225
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 2 cut(s) 64, 173
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 59, 116
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 193, 230
Hsp92II CATG 1 cut(s) 147
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 73, 241
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 121, 193
LpnPI CCDG 9 cut(s) 54, 63, 90, 112, 139, 176, 203, 238, 243
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 5, 75, 243
MboI GATC 3 cut(s) 3, 73, 241
MboII GAAGA 3 cut(s) 101, 122, 207
MnlI CCTC 8 cut(s) 34, 48, 55, 60, 62, 63, 194, 223
MspI CCGG 2 cut(s) 99, 225
MspR9I CCNGG 2 cut(s) 78, 191
MvaI CCWGG 2 cut(s) 78, 191
MwoI GCNNNNNNNGC 3 cut(s) 164, 193, 230
NdeII GATC 3 cut(s) 3, 73, 241
NlaIII CATG 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 135
PkrI GCNGC 2 cut(s) 36, 223
Psp6I CCWGG 2 cut(s) 76, 189
PspGI CCWGG 2 cut(s) 76, 189
PspPI GGNCC 2 cut(s) 165, 227
SapI GCTCTTC 1 cut(s) 135
SatI GCNGC 2 cut(s) 35, 222
Sau3AI GATC 3 cut(s) 3, 73, 241
Sau96I GGNCC 2 cut(s) 165, 227
ScrFI CCNGG 2 cut(s) 78, 191
SetI ASST 5 cut(s) 108, 125, 198, 215, 235
SinI GGWCC 1 cut(s) 227
SsiI CCGC 4 cut(s) 35, 185, 219, 247
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 76, 189
TauI GCSGC 1 cut(s) 37
TseI GCWGC 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.