Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

13923750 .. 13929804

Gene Structure 6055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGGCTAAATTGGGAATGGCTTTGCAACTCCGGGAAACACTTGAAGGAGGCAATTGTAGTCTACACGGGCCTATCTTCCGGCGACCTTCTTCACACTTTTGGCTCTGCTCTTTGCCTTTACCATGTCATTTATGAGCTTTTTGGGTCGTCCGAGACCCACCACCGCCTCGGGAACTTGGAGGAGATGCGGCCTTTGCCGCCGTCGGTCCGGCTCGGCGAGATCACCGCTGCTTGCTCTAATCCGAAGAAGCCTCTGCTCATGGCCATCAAGTCTCGGATCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

96

Amino Acids

10.9

Weight (kDa)

8.52

Isoelectric Point (pI)

27.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	4 cut(s)	166, 190, 200, 228
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	149, 279
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	3 cut(s)	70, 191, 264
ApeKI	GCWGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	70, 208
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	149, 279
BisI	GCNGC	3 cut(s)	191, 200, 231
BlsI	GCNGC	3 cut(s)	192, 201, 232
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	70, 208
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	217
BshFI	GGCC	3 cut(s)	72, 193, 266
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	3 cut(s)	33, 81, 211
BsmAI	GTCTC	2 cut(s)	149, 279
BsnI	GGCC	3 cut(s)	72, 193, 266
Bso31I	GGTCTC	1 cut(s)	149
BsoBI	CYCGRG	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	222, 279
BspACI	CCGC	4 cut(s)	166, 190, 200, 228
BspANI	GGCC	3 cut(s)	72, 193, 266
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	222, 279
BstC8I	GCNNGC	1 cut(s)	235
BstKTI	GATC	2 cut(s)	225, 282
BstMAI	GTCTC	2 cut(s)	149, 279
BstMBI	GATC	2 cut(s)	222, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 199
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	72, 193, 266
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	70, 208
CpoI	CGGWCCG	1 cut(s)	208
CspI	CGGWCCG	1 cut(s)	208
CviAII	CATG	2 cut(s)	125, 262
CviJI	RGCY	9 cut(s)	7, 22, 72, 105, 139, 193, 214, 253, 266
CviKI_1	RGCY	9 cut(s)	7, 22, 72, 105, 139, 193, 214, 253, 266
DpnI	GATC	2 cut(s)	224, 281
DpnII	GATC	2 cut(s)	222, 279
EaeI	YGGCCR	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	170
FaeI	CATG	2 cut(s)	128, 265
FaiI	YATR	3 cut(s)	126, 135, 263
FatI	CATG	2 cut(s)	124, 261
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	191, 200, 231
Fsp4HI	GCNGC	3 cut(s)	191, 200, 231
GluI	GCNGC	3 cut(s)	191, 200, 231
HaeIII	GGCC	3 cut(s)	72, 193, 266
HapII	CCGG	3 cut(s)	33, 81, 211
Hin1II	CATG	2 cut(s)	128, 265
HpaII	CCGG	3 cut(s)	33, 81, 211
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	154, 246, 279
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	2 cut(s)	40, 98
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 199
Hsp92II	CATG	2 cut(s)	128, 265
Kzo9I	GATC	2 cut(s)	222, 279
LpnPI	CCDG	3 cut(s)	46, 94, 224
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	1 cut(s)	177
MalI	GATC	2 cut(s)	224, 281
MboI	GATC	2 cut(s)	222, 279
MboII	GAAGA	3 cut(s)	69, 83, 259
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	2 cut(s)	10, 54
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	4 cut(s)	43, 175, 179, 264
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	33, 81, 211
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	196, 199
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	222, 279
NlaIII	CATG	2 cut(s)	128, 265
NmeAIII	GCCGAG	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	192, 201, 232
PspPI	GGNCC	2 cut(s)	70, 208
PsuI	RGATCY	1 cut(s)	279
Rsr2I	CGGWCCG	1 cut(s)	208
RsrII	CGGWCCG	1 cut(s)	208
SatI	GCNGC	3 cut(s)	191, 200, 231
Sau3AI	GATC	2 cut(s)	222, 279
Sau96I	GGNCC	2 cut(s)	70, 208
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	2 cut(s)	90, 141
SfaNI	GCATC	1 cut(s)	177
SinI	GGWCC	1 cut(s)	208
Sse9I	AATT	2 cut(s)	10, 54
SsiI	CCGC	4 cut(s)	166, 190, 200, 228
StyD4I	CCNGG	1 cut(s)	32
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	10, 54
TauI	GCSGC	2 cut(s)	193, 202
TseI	GCWGC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.