Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

53852803 .. 53853583

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG333600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCAACCTCTTCCGCTGCCGGTCCAGCTCGGCGAGATCACCGCCGAGGAGCTCAAGCAGTATGACGGCTCCGATCCCAAGAAGCCTCTGCTCATGGCCATCAAGTCTCAGATCTATGACGTGTCTCAGAGCAGGTCTGGTTCTTGGAATTTGCTGATATATGATGGCAATGGAATTGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

61

Amino Acids

6.66

Weight (kDa)

4.66

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	123
AciI	CCGC	2 cut(s)	14, 42
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	148
AflIII	ACRYGT	1 cut(s)	120
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	2 cut(s)	28, 52
AluI	AGCT	2 cut(s)	28, 52
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	111, 129
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	22
BalI	TGGCCA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	2 cut(s)	107, 158
BceAI	ACGGC	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	111, 129
BfuAI	ACCTGC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	2 cut(s)	122, 140
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	3
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	111, 129
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	36, 73, 111
BspACI	CCGC	2 cut(s)	14, 42
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	2 cut(s)	121, 139
BspLI	GGNNCC	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	19
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	36, 73, 111
Bst6I	CTCTTC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	108, 126
BstKTI	GATC	3 cut(s)	39, 76, 114
BstMAI	GTCTC	2 cut(s)	111, 129
BstMBI	GATC	3 cut(s)	36, 73, 111
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	3
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	98
BtrI	CACGTC	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	22
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	5 cut(s)	28, 52, 69, 85, 98
CviKI_1	RGCY	5 cut(s)	28, 52, 69, 85, 98
DdeI	CTNAG	2 cut(s)	108, 126
DpnI	GATC	3 cut(s)	38, 75, 113
DpnII	GATC	3 cut(s)	36, 73, 111
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	52
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	54
FaeI	CATG	1 cut(s)	97
FaiI	YATR	5 cut(s)	63, 95, 117, 160, 162
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	1 cut(s)	97
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	73, 111, 129
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	108, 126
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	36, 73, 111
LmnI	GCTCC	2 cut(s)	49, 74
LpnPI	CCDG	4 cut(s)	33, 38, 118, 123
Lsp1109I	GCAGC	1 cut(s)	3
MaeII	ACGT	1 cut(s)	120
MalI	GATC	3 cut(s)	38, 75, 113
MboI	GATC	3 cut(s)	36, 73, 111
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	54
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	2 cut(s)	148, 174
MluNI	TGGCCA	1 cut(s)	98
MnlI	CCTC	3 cut(s)	18, 40, 96
Mox20I	TGGCCA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	3 cut(s)	36, 73, 111
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	70
NmeAIII	GCCGAG	2 cut(s)	9, 70
PkrI	GCNGC	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	111
SacI	GAGCTC	1 cut(s)	54
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	3 cut(s)	36, 73, 111
Sau96I	GGNCC	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	5 cut(s)	10, 30, 54, 123, 137
SinI	GGWCC	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	148, 174
SsiI	CCGC	2 cut(s)	14, 42
SstI	GAGCTC	1 cut(s)	54
TaiI	ACGT	1 cut(s)	123
TasI	AATT	2 cut(s)	148, 174
TseI	GCWGC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.