Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

59016803 .. 59017468

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTCTGCAAATCTGGGAAACACTGAAGGAAGCAATCGTGGCCTACACGGGCCTATCTCCGGCGACCTTCTTCACACTCTTGGCTCTGCTCGTGGCTGCTTACCATATGCTTTCTGGGCTTTTTGGGCCGTTCGATACCCACCAGCGGCCCAGGAGCTTGGAGGAGATGCAGCCTCTGGCTCCGCCGGTGGAGGAGCTGAAGCAGTGCGACGTCTTCGATCCCAAGAAGCTTCTGCCTATGGCTATCAATACATATTCAATTACTCCTTCCTCTTCTCCTCTCACCCGTTCACGTCCATACGATGTGTTTTTGAGTTTTACAGAACGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

111

Amino Acids

12.52

Weight (kDa)

5.58

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AciI	CCGC	2 cut(s)	148, 185
AclWI	GGATC	1 cut(s)	215
AcuI	CTGAAG	2 cut(s)	47, 221
AcyI	GRCGYC	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	61, 147
AgsI	TTSAA	1 cut(s)	261
AjiI	CACGTC	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	159, 199, 232
AluI	AGCT	3 cut(s)	159, 199, 232
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	4 cut(s)	42, 52, 128, 149
ApeKI	GCWGC	2 cut(s)	98, 172
AspS9I	GGNCC	3 cut(s)	52, 128, 150
AsuHPI	GGTGA	1 cut(s)	277
BauI	CACGAG	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	85, 184
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	154
BisI	GCNGC	3 cut(s)	99, 149, 173
BlsI	GCNGC	3 cut(s)	100, 150, 174
Bme1390I	CCNGG	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	296
BmgT120I	GGNCC	3 cut(s)	52, 128, 150
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	208
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 147
Bse118I	RCCGGY	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	152
BseLI	CCNNNNNNNGG	2 cut(s)	61, 147
BseRI	GAGGAG	3 cut(s)	179, 209, 270
BseXI	GCAGC	2 cut(s)	85, 184
BshFI	GGCC	4 cut(s)	44, 54, 130, 151
BsiSI	CCGG	2 cut(s)	62, 188
BslI	CCNNNNNNNGG	2 cut(s)	61, 147
BsnI	GGCC	4 cut(s)	44, 54, 130, 151
Bsp143I	GATC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	148, 185
BspANI	GGCC	4 cut(s)	44, 54, 130, 151
BspLI	GGNNCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	280
BstACI	GRCGYC	1 cut(s)	213
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 118, 127
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	85, 184
BstV2I	GAAGAC	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	4 cut(s)	44, 54, 130, 151
BtrI	CACGTC	1 cut(s)	296
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	23, 212
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	52, 128, 150
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	47, 221
EcoRII	CCWGG	1 cut(s)	152
FaiI	YATR	5 cut(s)	108, 110, 242, 256, 301
FauNDI	CATATG	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	99, 149, 173
Fsp4HI	GCNGC	3 cut(s)	99, 149, 173
GluI	GCNGC	3 cut(s)	99, 149, 173
HaeIII	GGCC	4 cut(s)	44, 54, 130, 151
HapII	CCGG	2 cut(s)	62, 188
Hin1I	GRCGYC	1 cut(s)	213
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	2 cut(s)	62, 188
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	293
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	22, 79, 279
HpyCH4IV	ACGT	2 cut(s)	213, 295
HpyCH4V	TGCA	2 cut(s)	10, 172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 118, 127
HpySE526I	ACGT	2 cut(s)	213, 295
Hsp92I	GRCGYC	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	3 cut(s)	156, 187, 196
LpnPI	CCDG	7 cut(s)	75, 102, 139, 158, 164, 166, 201
Lsp1109I	GCAGC	2 cut(s)	85, 184
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	2 cut(s)	213, 295
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	3 cut(s)	64, 208, 267
MluCI	AATT	2 cut(s)	261, 331
MnlI	CCTC	5 cut(s)	157, 186, 187, 283, 291
MseI	TTAA	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	62, 188
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	41, 118, 127
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	183
PkrI	GCNGC	3 cut(s)	100, 150, 174
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	3 cut(s)	52, 128, 150
PstNI	CAGNNNCTG	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	334
SatI	GCNGC	3 cut(s)	99, 149, 173
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	3 cut(s)	52, 128, 150
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	6 cut(s)	71, 161, 201, 216, 234, 298
SfaNI	GCATC	1 cut(s)	159
SgrAI	CRCCGGYG	1 cut(s)	187
Sse9I	AATT	2 cut(s)	261, 331
SsiI	CCGC	2 cut(s)	148, 185
StyD4I	CCNGG	1 cut(s)	152
TaiI	ACGT	2 cut(s)	216, 298
TaqI	TCGA	2 cut(s)	135, 219
TasI	AATT	2 cut(s)	261, 331
TauI	GCSGC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TscAI	CASTG	2 cut(s)	30, 212
TseI	GCWGC	2 cut(s)	98, 172
TspRI	CASTG	2 cut(s)	30, 212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.