Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028287.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 369

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028287.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 316 bp

atggctctgcaaatctgggaaacactgaaggacgtgatcgtggcctactcgggcctatctccggcgaccttcttcacgcttttggctctgatcgtggccgcttaccatgtgaattcttggccttttgggtcgtccgatacccaccagcggcccaggagcttgcaggagacgcagcctctgccgccgccggtccagctcgacgagaacaccgaggaggagctgaagcagtgcgactgctccaatcccaagaagcctgtgcctatggctatcaatacggattcaattacaccttcctcttctcctctcacccgttcac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

105

Amino Acids

11.6

Weight (kDa)

4.92

Isoelectric Point (pI)

68.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	99, 148, 182, 185
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	47, 242
AfiI	CCNNNNNNNGG	2 cut(s)	61, 147
AgsI	TTSAA	1 cut(s)	282
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	159, 196, 220
AluI	AGCT	3 cut(s)	159, 196, 220
Alw26I	GTCTC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	5 cut(s)	42, 52, 96, 119, 149
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	112
AspS9I	GGNCC	3 cut(s)	52, 150, 190
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	161
BisI	GCNGC	5 cut(s)	99, 149, 173, 182, 185
BlsI	GCNGC	5 cut(s)	100, 150, 174, 183, 186
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	52, 150, 190
BmrFI	CCNGG	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	152, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 147
Bse118I	RCCGGY	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	152, 210
BseLI	CCNNNNNNNGG	2 cut(s)	61, 147
BseRI	GAGGAG	3 cut(s)	227, 230, 291
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	5 cut(s)	44, 54, 98, 121, 151
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	62, 188
BslI	CCNNNNNNNGG	2 cut(s)	61, 147
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	5 cut(s)	44, 54, 98, 121, 151
BsoBI	CYCGRG	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	36, 90
BspACI	CCGC	4 cut(s)	99, 148, 182, 185
BspANI	GGCC	5 cut(s)	44, 54, 98, 121, 151
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	152, 210
BssMI	GATC	2 cut(s)	36, 90
Bst2UI	CCWGG	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	39, 93
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	36, 90
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 178, 181, 193
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	184
BsuRI	GGCC	5 cut(s)	44, 54, 98, 121, 151
BtrI	CACGTC	1 cut(s)	34
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	23, 233
Cac8I	GCNNGC	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	52, 150, 190
CseI	GACGC	1 cut(s)	178
CviAII	CATG	1 cut(s)	107
DpnI	GATC	2 cut(s)	38, 92
DpnII	GATC	2 cut(s)	36, 90
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	47, 242
Eco88I	CYCGRG	1 cut(s)	49
EcoRI	GAATTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	152
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	1 cut(s)	110
FaiI	YATR	2 cut(s)	108, 263
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	99, 149, 173, 182, 185
Fsp4HI	GCNGC	5 cut(s)	99, 149, 173, 182, 185
GluI	GCNGC	5 cut(s)	99, 149, 173, 182, 185
HaeIII	GGCC	5 cut(s)	44, 54, 98, 121, 151
HapII	CCGG	2 cut(s)	62, 188
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	2 cut(s)	62, 188
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	90, 136
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	22, 79, 300
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	10, 163
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 178, 181, 193
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	36, 90
LmnI	GCTCC	3 cut(s)	156, 217, 242
LpnPI	CCDG	8 cut(s)	75, 139, 149, 158, 166, 201, 206, 267
Lsp1109I	GCAGC	1 cut(s)	184
MaeII	ACGT	1 cut(s)	33
MalI	GATC	2 cut(s)	38, 92
MboI	GATC	2 cut(s)	36, 90
MboII	GAAGA	2 cut(s)	64, 288
MluCI	AATT	2 cut(s)	112, 282
MnlI	CCTC	5 cut(s)	186, 205, 208, 304, 312
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	62, 188
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	4 cut(s)	169, 178, 181, 193
NdeII	GATC	2 cut(s)	36, 90
NlaIII	CATG	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	100, 150, 174, 183, 186
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspPI	GGNCC	3 cut(s)	52, 150, 190
PstNI	CAGNNNCTG	1 cut(s)	178
SatI	GCNGC	5 cut(s)	99, 149, 173, 182, 185
Sau3AI	GATC	2 cut(s)	36, 90
Sau96I	GGNCC	3 cut(s)	52, 150, 190
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	6 cut(s)	36, 71, 161, 198, 222, 292
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	2 cut(s)	112, 282
SsiI	CCGC	4 cut(s)	99, 148, 182, 185
StyD4I	CCNGG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	112, 282
TauI	GCSGC	4 cut(s)	101, 151, 184, 187
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	2 cut(s)	30, 233
TseI	GCWGC	1 cut(s)	172
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	30, 233
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.