Rroxscaffold_1G00005240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001347
Physical Location & Seq
Reverse (-)
7113160 .. 7113702
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005240.1

Sequence Viewer

Length: 543 bp
ATGTTTACTCGTTCTGGTTCTCGAACCAATTTTCGACGTCCTGGAGTAACCTTTGTTAATGCAACGCGTACTATCCATGACACTTTGGATTCTGGGTTCGGAGACCACTCTGAAGCAGCCGAGCGACACCCTCTGCCATATGTTATTCTTGATGACTCCCACGCCCATGCCATTGTGGTAGCTTCTGCGGCTCCAGATCATGAGCCAGAACATGAGCCGTTTGTCCATGCTCAGGTGAATCCCCAAGAGGGGCTACAAGATGATGATTTAGCTGCCAATGAAGAATTAGACCCAGAGCTTGATAATGATGAAGACGTGGAGGAAGAGATAGAAGTGGTTGAGGTGAGTTCTGATTCTTCAACCTCTACTTTATCTATGGACTCTGCTAGTTCGATAATCACATCAGACACAGTTGAGTCTATTTATAATCCATATGTTGCCTCTTATAATGATTTCTTAATTCCATATCAATCTATGAATCATGCTTCTGTTCACTCTGTTAAGGATGATGATGAGATCAATATGGCAATACTGTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.93

Weight (kDa)

4.16

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 426, 447
AatII GACGTC 1 cut(s) 40
AccII CGCG 1 cut(s) 67
AciI CCGC 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 37
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 3 cut(s) 232, 248, 249
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 1 cut(s) 360
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 1 cut(s) 40
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
AluBI AGCT 3 cut(s) 182, 272, 298
AluI AGCT 3 cut(s) 182, 272, 298
Alw26I GTCTC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 116, 272
AsuHPI GGTGA 2 cut(s) 247, 355
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 128, 259
BceAI ACGGC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 387
BisI GCNGC 3 cut(s) 117, 189, 273
BlsI GCNGC 3 cut(s) 118, 190, 274
Bme1390I CCNGG 1 cut(s) 42
BmgBI CACGTC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 2 cut(s) 63, 177
Bpu10I CCTNAGC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 248, 249
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 511
BseLI CCNNNNNNNGG 3 cut(s) 232, 248, 249
BseMII CTCAG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 128, 259
Bsh1236I CGCG 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 232, 248, 249
BsmAI GTCTC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 196, 516
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 96
BssMI GATC 2 cut(s) 196, 516
BssNI GRCGYC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 412, 534
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 1 cut(s) 67
BstKTI GATC 2 cut(s) 199, 519
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 2 cut(s) 196, 516
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 128, 259
BstV2I GAAGAC 1 cut(s) 318
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 1 cut(s) 511
CciI TCATGA 1 cut(s) 199
Csp6I GTAC 1 cut(s) 69
CviAII CATG 6 cut(s) 77, 167, 200, 212, 227, 482
CviJI RGCY 9 cut(s) 119, 182, 191, 205, 217, 253, 272, 298, 538
CviKI_1 RGCY 9 cut(s) 119, 182, 191, 205, 217, 253, 272, 298, 538
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 198, 518
DpnII GATC 2 cut(s) 196, 516
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 40
FaeI CATG 6 cut(s) 80, 170, 203, 215, 230, 485
FatI CATG 6 cut(s) 76, 166, 199, 211, 226, 481
FauNDI CATATG 2 cut(s) 139, 433
Fnu4HI GCNGC 3 cut(s) 117, 189, 273
FokI GGATG 1 cut(s) 518
Fsp4HI GCNGC 3 cut(s) 117, 189, 273
FspBI CTAG 1 cut(s) 387
GluI GCNGC 3 cut(s) 117, 189, 273
GsuI CTGGAG 2 cut(s) 63, 177
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 6 cut(s) 80, 170, 203, 215, 230, 485
HinfI GANTC 7 cut(s) 89, 155, 238, 353, 380, 416, 478
HphI GGTGA 2 cut(s) 247, 355
Hpy166II GTNNAC 2 cut(s) 6, 493
Hpy188I TCNGA 5 cut(s) 101, 112, 352, 406, 542
Hpy188III TCNNGA 4 cut(s) 21, 149, 194, 200
Hpy8I GTNNAC 2 cut(s) 6, 493
Hpy99I CGWCG 1 cut(s) 39
HpyCH4III ACNGT 2 cut(s) 412, 534
HpyCH4IV ACGT 2 cut(s) 37, 315
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 37, 315
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 6 cut(s) 80, 170, 203, 215, 230, 485
Kzo9I GATC 2 cut(s) 196, 516
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 7 cut(s) 27, 54, 78, 207, 218, 219, 306
Lsp1109I GCAGC 2 cut(s) 128, 259
MaeI CTAG 1 cut(s) 387
MaeII ACGT 2 cut(s) 37, 315
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 198, 518
MboI GATC 2 cut(s) 196, 516
MboII GAAGA 4 cut(s) 293, 323, 335, 348
MluCI AATT 3 cut(s) 28, 284, 459
MluI ACGCGT 1 cut(s) 65
MlyI GAGTC 3 cut(s) 149, 374, 425
MnlI CCTC 6 cut(s) 141, 241, 313, 334, 373, 451
MseI TTAA 3 cut(s) 57, 458, 501
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeI CATATG 2 cut(s) 139, 433
NdeII GATC 2 cut(s) 196, 516
NlaIII CATG 6 cut(s) 80, 170, 203, 215, 230, 485
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 145
PagI TCATGA 1 cut(s) 199
PfeI GAWTC 4 cut(s) 89, 238, 353, 478
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 3 cut(s) 118, 190, 274
PleI GAGTC 3 cut(s) 149, 374, 424
PpsI GAGTC 3 cut(s) 149, 374, 424
PsiI TTATAA 2 cut(s) 426, 447
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 192
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 3 cut(s) 57, 458, 501
SatI GCNGC 3 cut(s) 117, 189, 273
Sau3AI GATC 2 cut(s) 196, 516
SchI GAGTC 3 cut(s) 149, 374, 425
ScrFI CCNGG 1 cut(s) 42
SetI ASST 9 cut(s) 40, 53, 184, 237, 274, 300, 318, 345, 365
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 3 cut(s) 28, 284, 459
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 412, 534
TaiI ACGT 2 cut(s) 40, 318
TaqI TCGA 3 cut(s) 22, 34, 392
TasI AATT 3 cut(s) 28, 284, 459
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 4 cut(s) 89, 238, 353, 478
Tru1I TTAA 3 cut(s) 57, 458, 501
Tru9I TTAA 3 cut(s) 57, 458, 501
TseI GCWGC 2 cut(s) 116, 272
TspDTI ATGAA 3 cut(s) 294, 324, 491
XspI CTAG 1 cut(s) 387
ZraI GACGTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.