Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000160.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

65290 .. 65553

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000160.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgaggcaatcgtggtctacacaggcctatctccgtgaccttcttcacactcctggctatgatctttgccacttaccatgtctcttttctgggatttttgggtcgtccaagacccatcaccgccccatgaacttggaggagatgcagcctctgctgctgcaggtccagctaggcgagatcaccaccgaggagctgaaacagtatgatggctctgatcccaacaagcctctgctcatggccatcaagtctctgatctattggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

87

Amino Acids

10.08

Weight (kDa)

6.02

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	1 cut(s)	121
AclWI	GGATC	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	169, 193
AluI	AGCT	2 cut(s)	169, 193
Alw26I	GTCTC	2 cut(s)	86, 252
AlwI	GGATC	1 cut(s)	209
AlwNI	CAGNNNCTG	1 cut(s)	151
AoxI	GGCC	2 cut(s)	24, 237
ApeKI	GCWGC	3 cut(s)	145, 154, 157
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	110, 172
AvaII	GGWCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	141, 144, 157
BccI	CCATC	3 cut(s)	123, 200, 248
BciT130I	CCWGG	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	86, 252
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	3 cut(s)	146, 155, 158
BlsI	GCNGC	3 cut(s)	147, 156, 159
Bme1390I	CCNGG	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	152, 203
BseXI	GCAGC	3 cut(s)	141, 144, 157
BshFI	GGCC	2 cut(s)	26, 239
BsmAI	GTCTC	2 cut(s)	86, 252
BsnI	GGCC	2 cut(s)	26, 239
Bsp143I	GATC	4 cut(s)	61, 177, 214, 252
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	26, 239
BspMAI	CTGCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	4 cut(s)	61, 177, 214, 252
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	201
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	64, 180, 217, 255
BstMAI	GTCTC	2 cut(s)	86, 252
BstMBI	GATC	4 cut(s)	61, 177, 214, 252
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 154, 166
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	141, 144, 157
BstXI	CCANNNNNNTGG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	26, 239
BveI	ACCTGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	3 cut(s)	78, 127, 235
CviJI	RGCY	8 cut(s)	26, 57, 148, 169, 193, 210, 226, 239
CviKI_1	RGCY	8 cut(s)	26, 57, 148, 169, 193, 210, 226, 239
DpnI	GATC	4 cut(s)	63, 179, 216, 254
DpnII	GATC	4 cut(s)	61, 177, 214, 252
EaeI	YGGCCR	1 cut(s)	237
Eco147I	AGGCCT	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	52
FaeI	CATG	3 cut(s)	81, 130, 238
FaiI	YATR	5 cut(s)	60, 79, 128, 204, 236
FatI	CATG	3 cut(s)	77, 126, 234
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	146, 155, 158
Fsp4HI	GCNGC	3 cut(s)	146, 155, 158
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	3 cut(s)	146, 155, 158
HaeIII	GGCC	2 cut(s)	26, 239
Hin1II	CATG	3 cut(s)	81, 130, 238
HphI	GGTGA	2 cut(s)	110, 172
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	214, 252
Hpy8I	GTNNAC	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	145, 160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 154, 166
Hsp92II	CATG	3 cut(s)	81, 130, 238
Kzo9I	GATC	4 cut(s)	61, 177, 214, 252
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	8, 39, 66, 75, 146, 179
Lsp1109I	GCAGC	3 cut(s)	141, 144, 157
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	4 cut(s)	63, 179, 216, 254
MboI	GATC	4 cut(s)	61, 177, 214, 252
MboII	GAAGA	1 cut(s)	35
MlsI	TGGCCA	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	239
MnlI	CCTC	4 cut(s)	130, 159, 181, 237
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	151, 154, 166
NdeII	GATC	4 cut(s)	61, 177, 214, 252
NlaIII	CATG	3 cut(s)	81, 130, 238
NmuCI	GTSAC	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	147, 156, 159
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	151
SatI	GCNGC	3 cut(s)	146, 155, 158
Sau3AI	GATC	4 cut(s)	61, 177, 214, 252
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	4 cut(s)	42, 165, 171, 195
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	158
SinI	GGWCC	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	3 cut(s)	145, 154, 157
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.