Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8060394.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

220 .. 568

Gene Structure 349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8060394.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 349 bp

atggctctgcaaatctgggaaacactggaggaggcgatcgtggcctacacgggcctatctccggcgaccttcttcacactcttggctctgctcgtggccgctgaccatctgctttctgggctttttgggccgtccgatacccaccagcggcccaggagcttggaggagatccagcctctgccgccgccggtccagctcgacgaaatcaccgaggaggagctgaagcagtgcgacggctccgatcccaagaagcctctgcctatggctctctatacggattcaactactccttcctcttcttctcgcaccccttcacgtccgtacgatgtgtttttgagttttagaggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5 NB-ARC TIR

Protein Analysis

116

Amino Acids

12.79

Weight (kDa)

4.51

Isoelectric Point (pI)

66.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	99, 148, 182, 185
AclWI	GGATC	2 cut(s)	163, 236
AcoI	YGGCCR	1 cut(s)	96
AcuI	CTGAAG	1 cut(s)	242
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	61, 147
AgsI	TTSAA	1 cut(s)	282
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	159, 196, 220
AluI	AGCT	3 cut(s)	159, 196, 220
AlwI	GGATC	2 cut(s)	163, 236
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	5 cut(s)	42, 52, 96, 128, 149
AspS9I	GGNCC	4 cut(s)	52, 128, 150, 190
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	92
BccI	CCATC	1 cut(s)	114
BceAI	ACGGC	2 cut(s)	115, 250
BciT130I	CCWGG	1 cut(s)	154
BisI	GCNGC	4 cut(s)	99, 149, 182, 185
BlsI	GCNGC	4 cut(s)	100, 150, 183, 186
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	52, 128, 150, 190
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	152, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 147
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	152, 210
BseLI	CCNNNNNNNGG	2 cut(s)	61, 147
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	4 cut(s)	44, 179, 227, 230
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	44, 54, 98, 130, 151
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	62, 188
BsiWI	CGTACG	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	61, 147
BsnI	GGCC	5 cut(s)	44, 54, 98, 130, 151
Bsp143I	GATC	3 cut(s)	36, 168, 241
BspACI	CCGC	4 cut(s)	99, 148, 182, 185
BspANI	GGCC	5 cut(s)	44, 54, 98, 130, 151
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	163, 236
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	152, 210
BssMI	GATC	3 cut(s)	36, 168, 241
BssSI	CACGAG	1 cut(s)	92
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	301
BstKTI	GATC	3 cut(s)	39, 171, 244
BstMBI	GATC	3 cut(s)	36, 168, 241
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 118, 127, 181, 193
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	44, 54, 98, 130, 151
BtrI	CACGTC	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	23, 233
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	52, 128, 150, 190
Csp6I	GTAC	1 cut(s)	322
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	3 cut(s)	38, 170, 243
DpnII	GATC	3 cut(s)	36, 168, 241
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	152
FaiI	YATR	2 cut(s)	263, 273
Fnu4HI	GCNGC	4 cut(s)	99, 149, 182, 185
Fsp4HI	GCNGC	4 cut(s)	99, 149, 182, 185
GluI	GCNGC	4 cut(s)	99, 149, 182, 185
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	5 cut(s)	44, 54, 98, 130, 151
HapII	CCGG	2 cut(s)	62, 188
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	2 cut(s)	62, 188
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	136, 241
Hpy99I	CGWCG	2 cut(s)	203, 236
HpyAV	CCTTC	3 cut(s)	79, 300, 321
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 118, 127, 181, 193
HpySE526I	ACGT	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	36, 168, 241
LmnI	GCTCC	3 cut(s)	156, 217, 242
LpnPI	CCDG	9 cut(s)	11, 75, 102, 139, 158, 166, 185, 201, 206
MaeII	ACGT	1 cut(s)	316
MalI	GATC	3 cut(s)	38, 170, 243
MboI	GATC	3 cut(s)	36, 168, 241
MboII	GAAGA	3 cut(s)	64, 288, 291
MflI	RGATCY	1 cut(s)	168
MnlI	CCTC	9 cut(s)	22, 25, 157, 186, 205, 208, 264, 304, 338
MspA1I	CMGCKG	2 cut(s)	101, 148
MspI	CCGG	2 cut(s)	62, 188
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	5 cut(s)	41, 118, 127, 181, 193
NdeII	GATC	3 cut(s)	36, 168, 241
NlaIV	GGNNCC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	278
Pfl23II	CGTACG	1 cut(s)	321
PkrI	GCNGC	4 cut(s)	100, 150, 183, 186
Ple19I	CGATCG	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	4 cut(s)	52, 128, 150, 190
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	168
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SatI	GCNGC	4 cut(s)	99, 149, 182, 185
Sau3AI	GATC	3 cut(s)	36, 168, 241
Sau96I	GGNCC	4 cut(s)	52, 128, 150, 190
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	6 cut(s)	71, 161, 198, 222, 319, 349
SinI	GGWCC	1 cut(s)	190
SsiI	CCGC	4 cut(s)	99, 148, 182, 185
StyD4I	CCNGG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	198
TauI	GCSGC	4 cut(s)	101, 151, 184, 187
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	2 cut(s)	30, 233
TspGWI	ACGGA	2 cut(s)	290, 309
TspRI	CASTG	2 cut(s)	30, 233
VpaK11BI	GGWCC	1 cut(s)	190
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.