Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

61711952 .. 61712155

Gene Structure 204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG424900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGATCTTTGCCACTTACCATGTCTTTTATGGGATTTTTGGGCTGTCCGAGACCCATCACCGCCCCAGGAACTTAGAGCAGATGCAGCCTCTGCTGCCGCTAGTCCAACTAGGCAAGATCACCGCCGAGGAGCTGAAGCAGTACGACGGCTCTGATCCCAACAAGCCTCTGCTCATGGCCATCAAGTCTCTGATCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

67

Amino Acids

7.8

Weight (kDa)

6.82

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	61, 98, 123
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	2 cut(s)	44, 192
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	85, 94
AsuHPI	GGTGA	2 cut(s)	50, 112
BalI	TGGCCA	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	81, 97
BccI	CCATC	2 cut(s)	63, 188
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	44, 192
BfaI	CTAG	2 cut(s)	101, 110
BisI	GCNGC	3 cut(s)	86, 95, 98
BlsI	GCNGC	3 cut(s)	87, 96, 99
Bme1390I	CCNGG	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	65, 126
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	65, 126
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	81, 97
BshFI	GGCC	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	44, 192
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	4 cut(s)	3, 117, 154, 192
BspACI	CCGC	3 cut(s)	61, 98, 123
BspANI	GGCC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	44
BssECI	CCNNGG	2 cut(s)	65, 126
BssMI	GATC	4 cut(s)	3, 117, 154, 192
Bst2UI	CCWGG	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	73
BstKTI	GATC	4 cut(s)	6, 120, 157, 195
BstMAI	GTCTC	2 cut(s)	44, 192
BstMBI	GATC	4 cut(s)	3, 117, 154, 192
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 91, 94
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	81, 97
BsuRI	GGCC	1 cut(s)	179
CaiI	CAGNNNCTG	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	20, 175
CviJI	RGCY	6 cut(s)	43, 88, 133, 150, 166, 179
CviKI_1	RGCY	6 cut(s)	43, 88, 133, 150, 166, 179
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	4 cut(s)	5, 119, 156, 194
DpnII	GATC	4 cut(s)	3, 117, 154, 192
EaeI	YGGCCR	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	65
FaeI	CATG	2 cut(s)	23, 178
FaiI	YATR	3 cut(s)	21, 30, 176
FatI	CATG	2 cut(s)	19, 174
Fnu4HI	GCNGC	3 cut(s)	86, 95, 98
Fsp4HI	GCNGC	3 cut(s)	86, 95, 98
FspBI	CTAG	2 cut(s)	101, 110
GluI	GCNGC	3 cut(s)	86, 95, 98
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	23, 178
HphI	GGTGA	2 cut(s)	50, 112
Hpy188I	TCNGA	3 cut(s)	49, 154, 192
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 91, 94
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	23, 178
Kzo9I	GATC	4 cut(s)	3, 117, 154, 192
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	2 cut(s)	52, 79
Lsp1109I	GCAGC	2 cut(s)	81, 97
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	101, 110
MalI	GATC	4 cut(s)	5, 119, 156, 194
MboI	GATC	4 cut(s)	3, 117, 154, 192
MlsI	TGGCCA	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	99, 121, 177
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	85, 91, 94
NdeII	GATC	4 cut(s)	3, 117, 154, 192
NlaIII	CATG	2 cut(s)	23, 178
NmeAIII	GCCGAG	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	87, 96, 99
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	3 cut(s)	86, 95, 98
Sau3AI	GATC	4 cut(s)	3, 117, 154, 192
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	72
SsiI	CCGC	3 cut(s)	61, 98, 123
SspMI	CTAG	2 cut(s)	101, 110
StyD4I	CCNGG	1 cut(s)	65
TauI	GCSGC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	85, 94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XspI	CTAG	2 cut(s)	101, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.