Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003430.1

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

82153 .. 82428

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003430.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ctgggaacacaactgaatgaggtgattgtggtctacacgggcctatctccggcgaccttcttcacactcctggctctgatctttgcctcttaccatgccttttctgggatttttaggtcgtccgagacccaccaccgccccaagaacttggaagagatgcagcctctgttgccgctggtccagctaggcgagatcaccgctaaggagctgaagcagtacgacggaactgatcccaacaagcctctgctcatggccatcaagtctcaaatctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

91

Amino Acids

10.21

Weight (kDa)

6.3

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	3 cut(s)	136, 173, 198
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	49, 105
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	2 cut(s)	184, 208
AluI	AGCT	2 cut(s)	184, 208
Alw26I	GTCTC	2 cut(s)	119, 267
AlwI	GGATC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	2 cut(s)	40, 252
ApeKI	GCWGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	40, 178
AsuHPI	GGTGA	2 cut(s)	34, 187
AvaII	GGWCC	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	2 cut(s)	119, 267
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	161, 173
BlsI	GCNGC	2 cut(s)	162, 174
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	40, 178
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 105
BseBI	CCWGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	49, 105
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	42, 254
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	49, 105
BsmAI	GTCTC	2 cut(s)	119, 267
BsnI	GGCC	2 cut(s)	42, 254
Bso31I	GGTCTC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	78, 192, 229
BspACI	CCGC	3 cut(s)	136, 173, 198
BspANI	GGCC	2 cut(s)	42, 254
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	119
BssMI	GATC	3 cut(s)	78, 192, 229
Bst2UI	CCWGG	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	81, 195, 232
BstMAI	GTCTC	2 cut(s)	119, 267
BstMBI	GATC	3 cut(s)	78, 192, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 181
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	42, 254
CaiI	CAGNNNCTG	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	40, 178
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	95, 250
CviJI	RGCY	7 cut(s)	42, 74, 163, 184, 208, 241, 254
CviKI_1	RGCY	7 cut(s)	42, 74, 163, 184, 208, 241, 254
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	3 cut(s)	80, 194, 231
DpnII	GATC	3 cut(s)	78, 192, 229
EaeI	YGGCCR	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	98, 253
FaiI	YATR	2 cut(s)	96, 251
FatI	CATG	2 cut(s)	94, 249
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	161, 173
Fsp4HI	GCNGC	2 cut(s)	161, 173
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	161, 173
HaeIII	GGCC	2 cut(s)	42, 254
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	2 cut(s)	98, 253
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	34, 187
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	78, 124
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 181
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	98, 253
Kzo9I	GATC	3 cut(s)	78, 192, 229
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	56, 63, 83, 90, 161, 194
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	185
MalI	GATC	3 cut(s)	80, 194, 231
MboI	GATC	3 cut(s)	78, 192, 229
MboII	GAAGA	2 cut(s)	52, 164
MlsI	TGGCCA	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	254
MnlI	CCTC	4 cut(s)	13, 97, 174, 252
Mox20I	TGGCCA	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	175
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	169, 181
NdeII	GATC	3 cut(s)	78, 192, 229
NlaIII	CATG	2 cut(s)	98, 253
PkrI	GCNGC	2 cut(s)	162, 174
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	40, 178
PstNI	CAGNNNCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SatI	GCNGC	2 cut(s)	161, 173
Sau3AI	GATC	3 cut(s)	78, 192, 229
Sau96I	GGNCC	2 cut(s)	40, 178
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	5 cut(s)	24, 59, 119, 186, 210
SfaNI	GCATC	1 cut(s)	147
SinI	GGWCC	1 cut(s)	178
SsiI	CCGC	3 cut(s)	136, 173, 198
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	69
TauI	GCSGC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	160
TspGWI	ACGGA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	178
XcmI	CCANNNNNNNNNTGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.