Rw7G041640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001347
Physical Location & Seq
Forward (+)
65088239 .. 65089668
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041640.1

Sequence Viewer

Length: 720 bp
ATGTTGAGTCTCGCTGTGCAGCTAGCTGGAAAGACTCGTCCTTTCCCTGCTCGAGGACATCCTGTGGCTAGATCTGCCTTTCAAAGACCTTGTGTAACCTTTGTTGATACTGCTCATAATCTGCATGAGGCTTTGGCTTCCTCTAATGGCTTCCCTAGTCATACTAGGACAACTCATCATCAGGAGGATATATATACTACACAATCCAATATTTCTCAAGCTTTCACTGTTGCTGTTGAGGAGCCTCTGCCGTTAGCTATTATACCACCAAATAACAATCCCAATCTTCATATCAATGACGATGACCTGGCAGCTAATGAGGAACTGGAAGCCGATCTTAATGAAGCTATTGATGAGAATGTGGAAGTGGAGGAGGGAAGCTCTGATACTCTCTCTTTCTCTGCTTCTTCTTTAGATTTTGACTTGTCAATAATTACATCTCATACTGTTGAGTCTATGATGGTCTATAATCCTACTTCTGCTCTATACCCTATTTTTCTCAATACTTATCACCATAGCATTAATAGCTTTATCAACTCTGTTCAGGAGGTTGCTCTTGAACTAGCAATGTATGATCCTAATTTGGAAAATCTTGATAATTCTGTGGATGTTGTAACTATGGCGGTTTCTGCTCTTCCATTTCGAACTCCAAGAAAGGGAGGCAGAGAGGATATGGAGACCATGGATGCAAAACCTTCATCTTCTAAACCACCGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.22

Weight (kDa)

4.56

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 623
AclWI GGATC 1 cut(s) 569
AfiI CCNNNNNNNGG 2 cut(s) 53, 656
AgsI TTSAA 2 cut(s) 83, 560
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 8 cut(s) 22, 26, 221, 257, 314, 347, 381, 528
AluI AGCT 8 cut(s) 22, 26, 221, 257, 314, 347, 381, 528
Alw26I GTCTC 2 cut(s) 14, 671
AlwI GGATC 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 19, 311
AseI ATTAAT 1 cut(s) 522
AsuHPI GGTGA 1 cut(s) 503
AsuII TTCGAA 1 cut(s) 643
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 370, 402
BbvI GCAGC 2 cut(s) 31, 323
BccI CCATC 1 cut(s) 454
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 2 cut(s) 14, 671
BfaI CTAG 5 cut(s) 23, 69, 156, 165, 563
BglII AGATCT 1 cut(s) 71
BisI GCNGC 2 cut(s) 20, 312
BlsI GCNGC 2 cut(s) 21, 313
Bme1390I CCNGG 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 676
BmtI GCTAGC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu14I TTCGAA 1 cut(s) 643
BpuEI CTTGAG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 681
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 656
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 3 cut(s) 58, 613, 691
BseLI CCNNNNNNNGG 2 cut(s) 53, 656
BseMI GCAATG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 2 cut(s) 254, 386
BseXI GCAGC 2 cut(s) 31, 323
BsgI GTGCAG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 713
BslI CCNNNNNNNGG 2 cut(s) 53, 656
BsmAI GTCTC 2 cut(s) 14, 671
Bso31I GGTCTC 1 cut(s) 671
BsoBI CYCGRG 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 643
Bsp143I GATC 3 cut(s) 71, 334, 574
Bsp19I CCATGG 1 cut(s) 681
BspACI CCGC 1 cut(s) 623
BspLI GGNNCC 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 569
BspQI GCTCTTC 1 cut(s) 639
BspT104I TTCGAA 1 cut(s) 643
BspTNI GGTCTC 1 cut(s) 671
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 3 cut(s) 71, 334, 574
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 2 cut(s) 229, 448
Bst6I CTCTTC 1 cut(s) 639
BstBI TTCGAA 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 681
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 58, 613, 691
BstKTI GATC 3 cut(s) 74, 337, 577
BstMAI GTCTC 2 cut(s) 14, 671
BstMBI GATC 3 cut(s) 71, 334, 574
BstMWI GCNNNNNNNGC 3 cut(s) 74, 525, 629
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 31, 323
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 3 cut(s) 58, 613, 691
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 1 cut(s) 24
CviAII CATG 2 cut(s) 125, 682
DpnI GATC 3 cut(s) 73, 336, 576
DpnII GATC 3 cut(s) 71, 334, 574
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 2 cut(s) 128, 685
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 2 cut(s) 124, 681
Fnu4HI GCNGC 2 cut(s) 20, 312
FokI GGATG 3 cut(s) 45, 620, 698
Fsp4HI GCNGC 2 cut(s) 20, 312
FspBI CTAG 5 cut(s) 23, 69, 156, 165, 563
GluI GCNGC 2 cut(s) 20, 312
HapII CCGG 1 cut(s) 713
Hin1II CATG 2 cut(s) 128, 685
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 3 cut(s) 7, 34, 452
HpaII CCGG 1 cut(s) 713
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 4 cut(s) 182, 545, 557, 593
HpyAV CCTTC 1 cut(s) 705
HpyCH4III ACNGT 2 cut(s) 229, 448
HpyCH4V TGCA 3 cut(s) 19, 124, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 525, 629
Hsp92II CATG 2 cut(s) 128, 685
Kzo9I GATC 3 cut(s) 71, 334, 574
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 8 cut(s) 12, 60, 75, 167, 293, 311, 320, 530
Lsp1109I GCAGC 2 cut(s) 31, 323
LweI GCATC 1 cut(s) 676
MaeI CTAG 5 cut(s) 23, 69, 156, 165, 563
MaeIII GTNAC 2 cut(s) 94, 613
MalI GATC 3 cut(s) 73, 336, 576
MboI GATC 3 cut(s) 71, 334, 574
MboII GAAGA 4 cut(s) 278, 399, 626, 693
MflI RGATCY 1 cut(s) 71
MluCI AATT 3 cut(s) 432, 580, 598
MlyI GAGTC 3 cut(s) 16, 28, 461
MseI TTAA 2 cut(s) 339, 522
MslI CAYNNNNRTG 2 cut(s) 294, 715
MspI CCGG 1 cut(s) 713
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 74, 525, 629
NcoI CCATGG 1 cut(s) 681
NdeII GATC 3 cut(s) 71, 334, 574
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 128, 685
NlaIV GGNNCC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 643
PaeR7I CTCGAG 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 639
PkrI GCNGC 2 cut(s) 21, 313
PleI GAGTC 3 cut(s) 15, 28, 460
PpsI GAGTC 3 cut(s) 15, 28, 460
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 243
PspXI VCTCGAGB 1 cut(s) 51
PsuI RGATCY 1 cut(s) 71
RseI CAYNNNNRTG 2 cut(s) 294, 715
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 339, 522
SatI GCNGC 2 cut(s) 20, 312
Sau3AI GATC 3 cut(s) 71, 334, 574
SchI GAGTC 3 cut(s) 16, 28, 461
ScrFI CCNGG 1 cut(s) 308
SfaNI GCATC 1 cut(s) 676
Sfr274I CTCGAG 1 cut(s) 51
SfuI TTCGAA 1 cut(s) 643
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 2 cut(s) 294, 715
SmlI CTYRAG 2 cut(s) 51, 216
SmoI CTYRAG 2 cut(s) 51, 216
Sse9I AATT 3 cut(s) 432, 580, 598
SsiI CCGC 1 cut(s) 623
SspI AATATT 1 cut(s) 211
SspMI CTAG 5 cut(s) 23, 69, 156, 165, 563
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 2 cut(s) 229, 448
TaqI TCGA 2 cut(s) 52, 643
TasI AATT 3 cut(s) 432, 580, 598
Tru1I TTAA 2 cut(s) 339, 522
Tru9I TTAA 2 cut(s) 339, 522
TscAI CASTG 1 cut(s) 232
TseI GCWGC 2 cut(s) 19, 311
TspDTI ATGAA 3 cut(s) 278, 357, 687
TspRI CASTG 1 cut(s) 232
VspI ATTAAT 1 cut(s) 522
XagI CCTNNNNNAGG 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 51
XspI CTAG 5 cut(s) 23, 69, 156, 165, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.