Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Forward (+)

76585272 .. 76586339

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG549400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTAGCTGCTGCGGCTCCAGATCATGAGCCAGAACATGAGCCGCTTGTCCATCCTCAGGTGAATGCCCAGGAGGGGCTGCATGATGATGATTTAGCTGCCAATGATGAATTAGACCCAGAGCTTGATAATGATGAAGACGTGGAGGAAGAGATAGAAGTGGTTGAGGTGAGTTCTGATTCTTCAACCTCTACTTTATCTATCGACTCTGCTAGTTCGATAATCACATCAGACACAGTTAAGTCTATTTACAATCCATATGCTGCCTCTTATAATGATTTCTTAATCCCATATCAATTTATGAATCATGCTTCTGTTCACTCTGTTAAGGATGATGATGAGATCAATAATGGCAATACTGTGGCTCTGATTGATGACTCTAGTCAAATGGGATCCTCTGCTCTGTCTCGTAACATTAGAAAACGAGGACGAGAAGATATTGATAACTTTGGTGCAGAACCTTCTTCTGTAAATATGTCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.54

Weight (kDa)

4.05

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AciI	CCGC	2 cut(s)	14, 44
AclWI	GGATC	2 cut(s)	387, 400
AfiI	CCNNNNNNNGG	2 cut(s)	58, 75
AgsI	TTSAA	1 cut(s)	186
AjiI	CACGTC	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	3 cut(s)	8, 98, 124
AluI	AGCT	3 cut(s)	8, 98, 124
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	387, 400
ApeKI	GCWGC	5 cut(s)	8, 11, 79, 98, 263
AsuHPI	GGTGA	2 cut(s)	73, 181
AxyI	CCTNAGG	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	66, 85, 250
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	2 cut(s)	213, 381
BisI	GCNGC	7 cut(s)	9, 12, 15, 44, 80, 99, 264
BlsI	GCNGC	7 cut(s)	10, 13, 16, 45, 81, 100, 265
Bme1390I	CCNGG	1 cut(s)	71
BmgBI	CACGTC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	18, 394
BmrFI	CCNGG	1 cut(s)	71
BoxI	GACNNNNGTC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 75
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	52, 337
BseLI	CCNNNNNNNGG	2 cut(s)	58, 75
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	3 cut(s)	66, 85, 250
BsgI	GTGCAG	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	58, 75
BsmAI	GTCTC	1 cut(s)	411
BsmI	GAATGC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	22, 342, 392
BspACI	CCGC	2 cut(s)	14, 44
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	18, 394
BspPI	GGATC	2 cut(s)	387, 400
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	22, 342, 392
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	238, 361
Bst6I	CTCTTC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	52, 337
BstKTI	GATC	3 cut(s)	25, 345, 395
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	3 cut(s)	22, 342, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	71
BstPAI	GACNNNNGTC	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	66, 85, 250
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
Bsu36I	CCTNAGG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	52, 337
CciI	TCATGA	1 cut(s)	25
CviAII	CATG	4 cut(s)	26, 38, 83, 308
CviJI	RGCY	8 cut(s)	8, 17, 31, 43, 79, 98, 124, 365
CviKI_1	RGCY	8 cut(s)	8, 17, 31, 43, 79, 98, 124, 365
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	3 cut(s)	24, 344, 394
DpnII	GATC	3 cut(s)	22, 342, 392
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	29, 41, 86, 311
FatI	CATG	4 cut(s)	25, 37, 82, 307
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	9, 12, 15, 44, 80, 99, 264
FokI	GGATG	2 cut(s)	39, 344
Fsp4HI	GCNGC	7 cut(s)	9, 12, 15, 44, 80, 99, 264
FspBI	CTAG	2 cut(s)	213, 381
GluI	GCNGC	7 cut(s)	9, 12, 15, 44, 80, 99, 264
Hin1II	CATG	4 cut(s)	29, 41, 86, 311
HinfI	GANTC	4 cut(s)	179, 206, 304, 377
HphI	GGTGA	2 cut(s)	73, 181
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	4 cut(s)	178, 232, 369, 481
Hpy188III	TCNNGA	2 cut(s)	20, 26
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	2 cut(s)	238, 361
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	82, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	29, 41, 86, 311
Kzo9I	GATC	3 cut(s)	22, 342, 392
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	6 cut(s)	33, 44, 45, 56, 83, 132
Lsp1109I	GCAGC	3 cut(s)	66, 85, 250
MaeI	CTAG	2 cut(s)	213, 381
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	3 cut(s)	24, 344, 394
MboI	GATC	3 cut(s)	22, 342, 392
MboII	GAAGA	5 cut(s)	149, 161, 174, 446, 456
MflI	RGATCY	1 cut(s)	392
MluCI	AATT	2 cut(s)	110, 296
MlyI	GAGTC	2 cut(s)	200, 371
MnlI	CCTC	8 cut(s)	66, 67, 139, 160, 199, 277, 406, 419
MseI	TTAA	3 cut(s)	240, 284, 327
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	3 cut(s)	22, 342, 392
NlaIII	CATG	4 cut(s)	29, 41, 86, 311
NlaIV	GGNNCC	2 cut(s)	18, 394
PagI	TCATGA	1 cut(s)	25
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	179, 304
PkrI	GCNGC	7 cut(s)	10, 13, 16, 45, 81, 100, 265
PleI	GAGTC	2 cut(s)	200, 371
PpsI	GAGTC	2 cut(s)	200, 371
PshAI	GACNNNNGTC	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	18, 394
PsuI	RGATCY	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	3 cut(s)	240, 284, 327
SatI	GCNGC	7 cut(s)	9, 12, 15, 44, 80, 99, 264
Sau3AI	GATC	3 cut(s)	22, 342, 392
SchI	GAGTC	2 cut(s)	200, 371
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	8 cut(s)	10, 63, 100, 126, 144, 171, 191, 463
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	2 cut(s)	110, 296
SsiI	CCGC	2 cut(s)	14, 44
SspMI	CTAG	2 cut(s)	213, 381
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	238, 361
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	204, 218
TasI	AATT	2 cut(s)	110, 296
TauI	GCSGC	2 cut(s)	17, 46
TfiI	GAWTC	2 cut(s)	179, 304
Tru1I	TTAA	3 cut(s)	240, 284, 327
Tru9I	TTAA	3 cut(s)	240, 284, 327
TseI	GCWGC	5 cut(s)	8, 11, 79, 98, 263
TspDTI	ATGAA	3 cut(s)	123, 150, 317
XspI	CTAG	2 cut(s)	213, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.