Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

15868829 .. 15870155

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012164

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCAGTGGAACGCCCGATTGAGCCTGCCTAGGTTGCAAATCTCCGGCGGAGTCAGGGCTCCTATCCCTGAACCGGACCCATTAGATGCTACTACCTCACCGGCTATTCCGGCTGCTGGTCCTGAGGATGATTTGGCAGCCGATGAGGAACTCGATCCTGATATAGACAATGAAGAGCTTGAAGAAGAAGTTGAGATTGTGGAGGTGAGTTCTGATTCCTCCTCTTACGTTTCTCCTTTGCATTCTAATAGTTCTCTTATTACTTCAGACACTGTTGAGTCGCTTTATAATCCTTCCTATGCACCATATCCTGATTTGCTATCGTCCATGGAGAATTTCAATAATGAGTCTATTGGTTCTGTTCAGGAGGTTTCTGCTCCTGAACTGCATAATTTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.39

Weight (kDa)

4.05

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	73, 116
AgsI	TTSAA	2 cut(s)	182, 340
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	113, 137
ApoI	RAATTY	1 cut(s)	334
AspA2I	CCTAGG	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	76, 119
AsuHPI	GGTGA	2 cut(s)	90, 217
AvaII	GGWCC	2 cut(s)	76, 119
AvrII	CCTAGG	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	100, 149
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	114, 138
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	2 cut(s)	115, 139
Bme18I	GGWCC	2 cut(s)	76, 119
BmgT120I	GGNCC	2 cut(s)	76, 119
BmiI	GGNNCC	2 cut(s)	60, 78
BmsI	GCATC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	29, 327
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 116
Bse118I	RCCGGY	1 cut(s)	100
Bse21I	CCTNAGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	29, 327
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	73, 116
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	100, 149
BsiSI	CCGG	4 cut(s)	45, 74, 101, 110
BslI	CCNNNNNNNGG	2 cut(s)	73, 116
BsmI	GAATGC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	2 cut(s)	60, 78
BspPI	GGATC	1 cut(s)	149
BspQI	GCTCTTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	29, 327
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	2 cut(s)	29, 327
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 110
BstV1I	GCAGC	2 cut(s)	100, 149
Bsu36I	CCTNAGG	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 270
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	76, 119
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	6 cut(s)	24, 59, 104, 113, 140, 178
CviKI_1	RGCY	6 cut(s)	24, 59, 104, 113, 140, 178
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	29, 327
Eco24I	GRGCYC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	76, 119
Eco57I	CTGAAG	1 cut(s)	249
Eco81I	CCTNAGG	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	29, 327
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	2 cut(s)	29, 327
FaeI	CATG	1 cut(s)	331
FaiI	YATR	6 cut(s)	164, 288, 300, 307, 329, 390
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	114, 138
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	114, 138
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	2 cut(s)	114, 138
HapII	CCGG	4 cut(s)	45, 74, 101, 110
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	4 cut(s)	51, 215, 278, 347
HpaII	CCGG	4 cut(s)	45, 74, 101, 110
HphI	GGTGA	2 cut(s)	90, 217
Hpy188I	TCNGA	2 cut(s)	214, 268
Hpy188III	TCNNGA	5 cut(s)	122, 158, 311, 365, 380
HpyAV	CCTTC	1 cut(s)	303
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	4, 37, 241, 302, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 110
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	154
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	64, 382
Lsp1109I	GCAGC	2 cut(s)	100, 149
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	228
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	3 cut(s)	185, 194, 197
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	2 cut(s)	334, 391
MlyI	GAGTC	3 cut(s)	60, 287, 356
MnlI	CCTC	7 cut(s)	106, 118, 139, 196, 229, 232, 361
MseI	TTAA	1 cut(s)	400
MspI	CCGG	4 cut(s)	45, 74, 101, 110
Mva1269I	GAATGC	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	34, 110
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	60, 78
PciSI	GCTCTTC	1 cut(s)	168
PctI	GAATGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	115, 139
PleI	GAGTC	3 cut(s)	59, 286, 355
PpsI	GAGTC	3 cut(s)	59, 286, 355
PsiI	TTATAA	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	60, 78
PspPI	GGNCC	2 cut(s)	76, 119
PstNI	CAGNNNCTG	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	2 cut(s)	114, 138
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	76, 119
SchI	GAGTC	3 cut(s)	60, 287, 356
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	6 cut(s)	35, 98, 180, 207, 231, 372
SfaNI	GCATC	1 cut(s)	76
SinI	GGWCC	2 cut(s)	76, 119
Sse9I	AATT	2 cut(s)	334, 391
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	29, 327
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	334, 391
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TscAI	CASTG	1 cut(s)	277
TseI	GCWGC	2 cut(s)	113, 137
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	2 cut(s)	76, 119
XapI	RAATTY	1 cut(s)	334
XmaJI	CCTAGG	1 cut(s)	29
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.