Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

2089547 .. 2097303

Gene Structure 7757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAACTTGGAGGAGATGCAGCCTCTGCTACCATTGGTCCAGTTAGGCGAGATCACCGCCGAGGAGTTGAAGCAGTACGACGGCTCTAATCCCAACAAGCCTCTGCTCATGGCCATCAAGTCTCAGATCTATTGCCATTCAGCTCCACTTGCAACTCATCATTCTGATCACCATACAACTAAACTTGCTGATCACCACTCTGGTCACCTTGCTGAACACCTGTCCAATCACCATTCTGATCACCAGGATGCTCCACTTACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

88

Amino Acids

9.79

Weight (kDa)

5.87

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	6 cut(s)	46, 161, 185, 197, 221, 233
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	3 cut(s)	166, 190, 238
BcoDI	GTCTC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	126
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	6, 238
BsaJI	CCNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	26, 77
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	126
BsnI	GGCC	1 cut(s)	113
Bsp143I	GATC	5 cut(s)	51, 126, 166, 190, 238
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	5 cut(s)	51, 126, 166, 190, 238
Bst2UI	CCWGG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	123, 264
BstEII	GGTNACC	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	5 cut(s)	54, 129, 169, 193, 241
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	5 cut(s)	51, 126, 166, 190, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 149
BstNI	CCWGG	1 cut(s)	245
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	253
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	5 cut(s)	22, 84, 100, 113, 143
CviKI_1	RGCY	5 cut(s)	22, 84, 100, 113, 143
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	2 cut(s)	123, 264
DpnI	GATC	5 cut(s)	53, 128, 168, 192, 240
DpnII	GATC	5 cut(s)	51, 126, 166, 190, 238
EaeI	YGGCCR	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	37
Eco91I	GGTNACC	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 174
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	3 cut(s)	166, 190, 238
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	113
Hin1II	CATG	1 cut(s)	112
HphI	GGTGA	6 cut(s)	46, 161, 185, 197, 221, 233
Hpy188I	TCNGA	3 cut(s)	126, 166, 238
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	19, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 149
HpyF3I	CTNAG	2 cut(s)	123, 264
Hsp92II	CATG	1 cut(s)	112
Ksp22I	TGATCA	3 cut(s)	166, 190, 238
Kzo9I	GATC	5 cut(s)	51, 126, 166, 190, 238
LmnI	GCTCC	2 cut(s)	148, 256
LpnPI	CCDG	5 cut(s)	53, 186, 230, 233, 257
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	6, 238
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	5 cut(s)	53, 128, 168, 192, 240
MboI	GATC	5 cut(s)	51, 126, 166, 190, 238
MflI	RGATCY	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MnlI	CCTC	4 cut(s)	4, 33, 55, 111
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	25, 149
NdeII	GATC	5 cut(s)	51, 126, 166, 190, 238
NlaIII	CATG	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	5 cut(s)	51, 126, 166, 190, 238
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	3 cut(s)	145, 210, 222
SfaNI	GCATC	2 cut(s)	6, 238
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	246
SsiI	CCGC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.