Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

36072371 .. 36077441

Gene Structure 5071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTCTGCAACTCTGGGAAACACTGAAGGAGGCGATCGTGGCCTACACAGGCCTATCTCCGGCGACCTTCTTCACACTCTTGGCTCTGCTCGTGACCGCTTACCATGTGCTTTCTGGGCTTTTTGGGCCGTCCCACACCCACCAGCGGCCCAGGAGCTTGGAGGAGATGCAGCCTCTGCCGCCGCCGGTCCTGCTCGGCGAGATCACCGAGGAGGAACTGAAGCAATCAATGAAATGGCTGGTCACAGGATTGCTGATGCTGAAGGACCAAGTGTTGTCAATATATAAGATCTGTAGCATCACTGCGCTTGCCTTGGTGCATCACTGGAATGATCGACCACAGGAAAGTGAAGGCACTAATTCCATGACTTGCTGGACAAAGGTGAAGAAATCAGTCTTGTTGATTAAGTCAGATGCTAAACTGCGATATTATCCCATCATGAACTTGTGGACACTTTCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

155

Amino Acids

17.58

Weight (kDa)

7.8

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	99, 148, 182, 185
AcuI	CTGAAG	3 cut(s)	47, 242, 284
AfiI	CCNNNNNNNGG	2 cut(s)	61, 147
AgsI	TTSAA	1 cut(s)	462
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	4 cut(s)	42, 52, 128, 149
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	4 cut(s)	128, 150, 190, 268
AsuHPI	GGTGA	2 cut(s)	199, 397
AvaII	GGWCC	2 cut(s)	190, 268
BauI	CACGAG	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	446
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	295
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	4 cut(s)	149, 173, 182, 185
BlsI	GCNGC	4 cut(s)	150, 174, 183, 186
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	190, 268
BmgT120I	GGNCC	4 cut(s)	128, 150, 190, 268
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	5 cut(s)	159, 249, 309, 331, 406
BsaJI	CCNNGG	3 cut(s)	152, 210, 315
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 147
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	152, 210, 315
BseLI	CCNNNNNNNGG	2 cut(s)	61, 147
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	179, 227
BseXI	GCAGC	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	4 cut(s)	44, 54, 130, 151
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	62, 188
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	61, 147
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	44, 54, 130, 151
Bsp143I	GATC	4 cut(s)	36, 204, 291, 334
BspACI	CCGC	4 cut(s)	99, 148, 182, 185
BspANI	GGCC	4 cut(s)	44, 54, 130, 151
BspHI	TCATGA	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	152, 210, 315
BssMI	GATC	4 cut(s)	36, 204, 291, 334
BssSI	CACGAG	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	4 cut(s)	39, 207, 294, 337
BstMBI	GATC	4 cut(s)	36, 204, 291, 334
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 118, 127, 178, 181, 193
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	4 cut(s)	44, 54, 130, 151
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	23, 303, 325
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	310
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	128, 150, 190, 268
CviAII	CATG	3 cut(s)	107, 367, 442
DpnI	GATC	4 cut(s)	38, 206, 293, 336
DpnII	GATC	4 cut(s)	36, 204, 291, 334
Eco130I	CCWWGG	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	190, 268
Eco57I	CTGAAG	3 cut(s)	47, 242, 284
EcoRII	CCWGG	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	3 cut(s)	110, 370, 445
FaiI	YATR	5 cut(s)	108, 286, 288, 368, 443
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	3 cut(s)	106, 366, 441
Fnu4HI	GCNGC	4 cut(s)	149, 173, 182, 185
Fsp4HI	GCNGC	4 cut(s)	149, 173, 182, 185
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	4 cut(s)	149, 173, 182, 185
HaeIII	GGCC	4 cut(s)	44, 54, 130, 151
HapII	CCGG	2 cut(s)	62, 188
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	3 cut(s)	110, 370, 445
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	62, 188
HphI	GGTGA	2 cut(s)	199, 397
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	2 cut(s)	94, 442
Hpy8I	GTNNAC	1 cut(s)	453
HpyAV	CCTTC	4 cut(s)	22, 79, 259, 347
HpyCH4V	TGCA	3 cut(s)	10, 172, 322
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 118, 127, 178, 181, 193
Hsp92II	CATG	3 cut(s)	110, 370, 445
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	4 cut(s)	36, 204, 291, 334
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	5 cut(s)	159, 249, 309, 331, 406
MaeIII	GTNAC	2 cut(s)	94, 244
MalI	GATC	4 cut(s)	38, 206, 293, 336
MboI	GATC	4 cut(s)	36, 204, 291, 334
MboII	GAAGA	2 cut(s)	64, 400
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	1 cut(s)	361
MnlI	CCTC	5 cut(s)	25, 157, 186, 205, 208
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	62, 188
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	6 cut(s)	41, 118, 127, 178, 181, 193
NdeII	GATC	4 cut(s)	36, 204, 291, 334
NlaIII	CATG	3 cut(s)	110, 370, 445
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	2 cut(s)	94, 244
PagI	TCATGA	1 cut(s)	441
PceI	AGGCCT	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	150, 174, 183, 186
Ple19I	CGATCG	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspPI	GGNCC	4 cut(s)	128, 150, 190, 268
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	291
PvuI	CGATCG	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	4 cut(s)	149, 173, 182, 185
Sau3AI	GATC	4 cut(s)	36, 204, 291, 334
Sau96I	GGNCC	4 cut(s)	128, 150, 190, 268
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	3 cut(s)	71, 161, 387
SfaNI	GCATC	5 cut(s)	159, 249, 309, 331, 406
SfcI	CTRYAG	1 cut(s)	295
SinI	GGWCC	2 cut(s)	190, 268
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	1 cut(s)	361
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	4 cut(s)	99, 148, 182, 185
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	315
TaqI	TCGA	1 cut(s)	337
TasI	AATT	1 cut(s)	361
TauI	GCSGC	3 cut(s)	151, 184, 187
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	3 cut(s)	30, 310, 332
TseFI	GTSAC	2 cut(s)	94, 244
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	2 cut(s)	94, 244
TspDTI	ATGAA	2 cut(s)	248, 458
TspRI	CASTG	3 cut(s)	30, 310, 332
VpaK11BI	GGWCC	2 cut(s)	190, 268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.