Rh7CG515200

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001347
Physical Location & Seq
Forward (+)
69474364 .. 69479247
4884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG515200.1

Sequence Viewer

Length: 999 bp
ATGGCTCTGCAAATCTGGGAAACACTGAAGGACGCGATCGTGGCCTACACGGGCCTGTCTCCGGCGACCTTCTTCACACTCTTGGCTCTGCTCGTGGCCGCTTACCATATGCTTTCTGGGCTTTTTGGGCCATTCGATACCCACCAGCGGCCCAGGAGCTTGGAGGAGATCCAGCCTCTGCCGCCGCCGGTCCTGCTCGACGAGATCACCGAGGAGGAGCTGAAGCAGTACGACGGCTCCGATCCCAAGAATCCTCTGCCTATGGCTCTCAATACGGATTCAATTACTCCTTCCACTTCTTCTCTCACCCGTTCATCTCCATACGATGAGGCACGGAAGAAGTTTGATCATCAGGTGGAGGCTGATCTCTTCTCTGTTTTACTCTCTTCTCAGAAGTACGAATTCGGGGTGGTATTTCCAGCAAGTCTTGAAATTCCAAAGTGGTTCAGTTGTCAAATGGATTTCAAAGGGAATGGACAGTTTGAATTTGATATTCAAGTCCTTCCTAATTTCAAATGGGAGAACACAGGATTAGCTCTATGTGTTGCTGCCGAACGGAGCTATTTGGGATTCCAAATTTTTATCAACGAAGTACTACTGCCGATTGACAGTTTACATGATCATATTCGTTTTCAGGGACACGATTTTGGAGATGATTCGGCTCGTGTGTGGCTGTTTTATATTCCGTTCGATAGAATTGATATGAGTCCGTTTGGTCATAAGCGTCCGTTGGCACCTTTCCAATGTCGAGTTGGTATTTTTCAAAGACGCTATCCTAACATGGTTCCCTGGAAAAGCTGCGGGGTGCACCTGGTAATGCCACCAAATGAAGAGTGTATGAAACTATCCCACGCATGGAACCTCAGGGATAGCAGCAAAACAGGATTAAGTGAAATGGCTGGTCAGAAGATTACTGATGCTGAAGGACCGAGTGCTGTCAATGAGATCTGTAGCATAACCTTTAATGCATCACTGGCGGAAATGACCACAGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

332

Amino Acids

37.46

Weight (kDa)

5.13

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 733
AccII CGCG 1 cut(s) 35
AciI CCGC 6 cut(s) 99, 148, 182, 185, 801, 977
AclWI GGATC 2 cut(s) 163, 236
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 4 cut(s) 401, 432, 485, 576
AcuI CTGAAG 3 cut(s) 47, 242, 942
AfaI GTAC 3 cut(s) 230, 398, 594
AfiI CCNNNNNNNGG 3 cut(s) 61, 147, 855
AgsI TTSAA 7 cut(s) 282, 431, 466, 485, 497, 514, 764
AjnI CCWGG 3 cut(s) 152, 788, 810
AluBI AGCT 5 cut(s) 159, 220, 536, 561, 798
AluI AGCT 5 cut(s) 159, 220, 536, 561, 798
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 1 cut(s) 63
Alw44I GTGCAC 1 cut(s) 806
AlwI GGATC 2 cut(s) 163, 236
AlwNI CAGNNNCTG 1 cut(s) 178
AoxI GGCC 5 cut(s) 42, 52, 96, 128, 149
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 3 cut(s) 548, 798, 873
ApoI RAATTY 4 cut(s) 401, 432, 485, 576
AspS9I GGNCC 5 cut(s) 52, 128, 150, 190, 926
AsuHPI GGTGA 2 cut(s) 199, 298
AvaII GGWCC 2 cut(s) 190, 926
AxyI CCTNAGG 1 cut(s) 863
BaeGI GKGCMC 1 cut(s) 810
BanI GGYRCC 1 cut(s) 733
BauI CACGAG 2 cut(s) 92, 663
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 3 cut(s) 535, 785, 885
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 3 cut(s) 154, 790, 812
BclI TGATCA 2 cut(s) 346, 619
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 949
BglII AGATCT 1 cut(s) 945
BisI GCNGC 7 cut(s) 99, 149, 182, 185, 549, 799, 874
BlsI GCNGC 7 cut(s) 100, 150, 183, 186, 550, 800, 875
BmcAI AGTACT 1 cut(s) 594
Bme1390I CCNGG 3 cut(s) 154, 790, 812
Bme18I GGWCC 2 cut(s) 190, 926
BmgT120I GGNCC 5 cut(s) 52, 128, 150, 190, 926
BmiI GGNNCC 4 cut(s) 238, 735, 786, 860
BmrFI CCNGG 3 cut(s) 154, 790, 812
BmsI GCATC 2 cut(s) 907, 977
BsaJI CCNNGG 3 cut(s) 152, 210, 788
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 147, 855
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 978
Bse21I CCTNAGG 1 cut(s) 863
BseBI CCWGG 3 cut(s) 154, 790, 812
BseDI CCNNGG 3 cut(s) 152, 210, 788
BseLI CCNNNNNNNGG 3 cut(s) 61, 147, 855
BseMII CTCAG 2 cut(s) 404, 877
BseNI ACTGG 1 cut(s) 978
BseRI GAGGAG 3 cut(s) 179, 227, 230
BseSI GKGCMC 1 cut(s) 810
BseXI GCAGC 3 cut(s) 535, 785, 885
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 5 cut(s) 44, 54, 98, 130, 151
BshNI GGYRCC 1 cut(s) 733
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 810
BsiSI CCGG 2 cut(s) 62, 188
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 3 cut(s) 61, 147, 855
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 651
BsnI GGCC 5 cut(s) 44, 54, 98, 130, 151
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
BspACI CCGC 6 cut(s) 99, 148, 182, 185, 801, 977
BspANI GGCC 5 cut(s) 44, 54, 98, 130, 151
BspCNI CTCAG 2 cut(s) 403, 876
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 4 cut(s) 238, 735, 786, 860
BspPI GGATC 2 cut(s) 163, 236
BspT107I GGYRCC 1 cut(s) 733
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 1 cut(s) 978
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 152, 210, 788
BssMI GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
BssSI CACGAG 2 cut(s) 92, 663
Bst2BI CACGAG 2 cut(s) 92, 663
Bst2UI CCWGG 3 cut(s) 154, 790, 812
Bst4CI ACNGT 2 cut(s) 480, 611
Bst6I CTCTTC 3 cut(s) 374, 391, 825
BstDEI CTNAG 2 cut(s) 390, 863
BstFNI CGCG 1 cut(s) 35
BstKTI GATC 8 cut(s) 39, 171, 207, 244, 349, 367, 622, 948
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 6 cut(s) 41, 118, 127, 181, 193, 974
BstNI CCWGG 3 cut(s) 154, 790, 812
BstSCI CCNGG 3 cut(s) 152, 788, 810
BstSFI CTRYAG 1 cut(s) 949
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 535, 785, 885
BstX2I RGATCY 2 cut(s) 168, 945
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 2 cut(s) 168, 945
Bsu36I CCTNAGG 1 cut(s) 863
BsuRI GGCC 5 cut(s) 44, 54, 98, 130, 151
BtsIMutI CAGTG 2 cut(s) 23, 971
CaiI CAGNNNCTG 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 5 cut(s) 52, 128, 150, 190, 926
CseI GACGC 3 cut(s) 41, 713, 777
CsiI ACCWGGT 1 cut(s) 810
Csp6I GTAC 3 cut(s) 229, 397, 593
CviAII CATG 3 cut(s) 617, 781, 855
CviQI GTAC 3 cut(s) 229, 397, 593
DdeI CTNAG 2 cut(s) 390, 863
DpnI GATC 8 cut(s) 38, 170, 206, 243, 348, 366, 621, 947
DpnII GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 3 cut(s) 374, 391, 825
EarI CTCTTC 3 cut(s) 374, 391, 825
EciI GGCGGA 1 cut(s) 992
Eco47I GGWCC 2 cut(s) 190, 926
Eco57I CTGAAG 3 cut(s) 47, 242, 942
Eco81I CCTNAGG 1 cut(s) 863
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 3 cut(s) 152, 788, 810
EcoT22I ATGCAT 1 cut(s) 970
FaeI CATG 3 cut(s) 620, 784, 858
FaqI GGGAC 1 cut(s) 651
FatI CATG 3 cut(s) 616, 780, 854
FauI CCCGC 1 cut(s) 794
FauNDI CATATG 1 cut(s) 108
FbaI TGATCA 2 cut(s) 346, 619
Fnu4HI GCNGC 7 cut(s) 99, 149, 182, 185, 549, 799, 874
Fsp4HI GCNGC 7 cut(s) 99, 149, 182, 185, 549, 799, 874
GluI GCNGC 7 cut(s) 99, 149, 182, 185, 549, 799, 874
HaeIII GGCC 5 cut(s) 44, 54, 98, 130, 151
HapII CCGG 2 cut(s) 62, 188
HgaI GACGC 3 cut(s) 41, 713, 777
Hin1II CATG 3 cut(s) 620, 784, 858
HinfI GANTC 5 cut(s) 250, 278, 570, 656, 706
HpaII CCGG 2 cut(s) 62, 188
HphI GGTGA 2 cut(s) 199, 298
Hpy166II GTNNAC 2 cut(s) 614, 808
Hpy188I TCNGA 3 cut(s) 241, 393, 906
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 2 cut(s) 614, 808
Hpy99I CGWCG 2 cut(s) 203, 236
HpyAV CCTTC 5 cut(s) 22, 79, 300, 512, 917
HpyCH4III ACNGT 2 cut(s) 480, 611
HpyCH4V TGCA 3 cut(s) 10, 808, 968
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 118, 127, 181, 193, 974
HpyF3I CTNAG 2 cut(s) 390, 863
Hsp92II CATG 3 cut(s) 620, 784, 858
Ksp22I TGATCA 2 cut(s) 346, 619
Kzo9I GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
LmnI GCTCC 4 cut(s) 156, 217, 242, 558
Lsp1109I GCAGC 3 cut(s) 535, 785, 885
LweI GCATC 2 cut(s) 907, 977
MabI ACCWGGT 1 cut(s) 810
MalI GATC 8 cut(s) 38, 170, 206, 243, 348, 366, 621, 947
MboI GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
MboII GAAGA 7 cut(s) 64, 291, 349, 361, 378, 842, 919
MflI RGATCY 2 cut(s) 168, 945
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 7 cut(s) 282, 401, 432, 485, 508, 576, 696
MlyI GAGTC 1 cut(s) 715
MnlI CCTC 8 cut(s) 157, 186, 205, 208, 264, 322, 352, 872
Mph1103I ATGCAT 1 cut(s) 970
MseI TTAA 2 cut(s) 887, 963
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 2 cut(s) 62, 188
MspR9I CCNGG 3 cut(s) 154, 790, 812
MvaI CCWGG 3 cut(s) 154, 790, 812
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 6 cut(s) 41, 118, 127, 181, 193, 974
NdeI CATATG 1 cut(s) 108
NdeII GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
NlaIII CATG 3 cut(s) 620, 784, 858
NlaIV GGNNCC 4 cut(s) 238, 735, 786, 860
NsiI ATGCAT 1 cut(s) 970
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 237
PfeI GAWTC 4 cut(s) 250, 278, 570, 656
PkrI GCNGC 7 cut(s) 100, 150, 183, 186, 550, 800, 875
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 152, 788, 810
PspGI CCWGG 3 cut(s) 152, 788, 810
PspN4I GGNNCC 4 cut(s) 238, 735, 786, 860
PspPI GGNCC 5 cut(s) 52, 128, 150, 190, 926
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 2 cut(s) 168, 945
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 3 cut(s) 230, 398, 594
RsaNI GTAC 3 cut(s) 229, 397, 593
SaqAI TTAA 2 cut(s) 887, 963
SatI GCNGC 7 cut(s) 99, 149, 182, 185, 549, 799, 874
Sau3AI GATC 8 cut(s) 36, 168, 204, 241, 346, 364, 619, 945
Sau96I GGNCC 5 cut(s) 52, 128, 150, 190, 926
ScaI AGTACT 1 cut(s) 594
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 3 cut(s) 154, 790, 812
SduI GDGCHC 1 cut(s) 810
SexAI ACCWGGT 1 cut(s) 810
SfaNI GCATC 2 cut(s) 907, 977
SfcI CTRYAG 1 cut(s) 949
SinI GGWCC 2 cut(s) 190, 926
Sse9I AATT 7 cut(s) 282, 401, 432, 485, 508, 576, 696
SsiI CCGC 6 cut(s) 99, 148, 182, 185, 801, 977
StyD4I CCNGG 3 cut(s) 152, 788, 810
TaaI ACNGT 2 cut(s) 480, 611
TaqI TCGA 4 cut(s) 135, 198, 690, 748
TaqII GACCGA 1 cut(s) 943
TasI AATT 7 cut(s) 282, 401, 432, 485, 508, 576, 696
TatI WGTACW 1 cut(s) 592
TauI GCSGC 4 cut(s) 101, 151, 184, 187
TfiI GAWTC 4 cut(s) 250, 278, 570, 656
Tru1I TTAA 2 cut(s) 887, 963
Tru9I TTAA 2 cut(s) 887, 963
TscAI CASTG 2 cut(s) 30, 978
TseI GCWGC 3 cut(s) 548, 798, 873
TspDTI ATGAA 3 cut(s) 303, 843, 854
TspGWI ACGGA 6 cut(s) 290, 349, 571, 675, 699, 717
TspRI CASTG 2 cut(s) 30, 978
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 190, 926
XapI RAATTY 4 cut(s) 401, 432, 485, 576
XcmI CCANNNNNNNNNTGG 2 cut(s) 113, 749
ZrmI AGTACT 1 cut(s) 594
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.