Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

31090755 .. 31109320

Gene Structure 18566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG177300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCTCACTGCAAAAATTAAGGAGGCGATCGTGGTCTACACGAGCCTATCTCCAGCGACATTCTTCACGCTCCTAGCTCTGCTCTTCGCCGCTTGCCATGTCCTTTCTGGGCTTTTTGGGCTATCCGAGACCCACAACCGCCCCAGGAGCTTGGAGAAGATGCAGCCTCTTCCACCGCCGGTCCAGCTTGGTGAGATCACCGCCGAGGAGCTCAAGCAGTACGACGGCTCCGATCCCAAGAAGCCTATGCTCATGGCCATCAAGTCTCAGATCTATGACGTGTCTCAGAGCAGGTCTGGTTCTTGGAATTTACTGATATATGATGGCAATGGAAGTGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

114

Amino Acids

12.43

Weight (kDa)

6.72

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	4 cut(s)	90, 139, 176, 201
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	279
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	4 cut(s)	77, 150, 187, 211
AluI	AGCT	4 cut(s)	77, 150, 187, 211
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	3 cut(s)	122, 270, 288
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	190, 203
AvaII	GGWCC	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	266, 317
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	3 cut(s)	122, 270, 288
BfaI	CTAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	282
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	90, 164
BlsI	GCNGC	2 cut(s)	91, 165
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	181
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	143, 204
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bse118I	RCCGGY	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	143, 204
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	281, 299
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	179
BsmAI	GTCTC	3 cut(s)	122, 270, 288
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	27, 195, 232, 270
BspACI	CCGC	4 cut(s)	90, 139, 176, 201
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	280, 298
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	143, 204
BssMI	GATC	4 cut(s)	27, 195, 232, 270
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	89, 174
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	267, 285
BstKTI	GATC	4 cut(s)	30, 198, 235, 273
BstMAI	GTCTC	3 cut(s)	122, 270, 288
BstMBI	GATC	4 cut(s)	27, 195, 232, 270
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 147, 184
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	257
BtrI	CACGTC	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	6
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	1 cut(s)	316
CviAII	CATG	2 cut(s)	98, 253
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	267, 285
DpnI	GATC	4 cut(s)	29, 197, 234, 272
DpnII	GATC	4 cut(s)	27, 195, 232, 270
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	89, 174
EarI	CTCTTC	2 cut(s)	89, 174
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	2 cut(s)	101, 256
FaiI	YATR	6 cut(s)	99, 248, 254, 276, 319, 321
FatI	CATG	2 cut(s)	97, 252
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	90, 164
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	90, 164
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	90, 164
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	2 cut(s)	101, 256
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	2 cut(s)	190, 203
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	4 cut(s)	127, 232, 270, 288
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	2 cut(s)	11, 163
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 147, 184
HpyF3I	CTNAG	2 cut(s)	267, 285
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	101, 256
Kzo9I	GATC	4 cut(s)	27, 195, 232, 270
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	4 cut(s)	75, 147, 208, 233
LpnPI	CCDG	8 cut(s)	66, 93, 130, 157, 192, 197, 277, 282
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	279
MalI	GATC	4 cut(s)	29, 197, 234, 272
MboI	GATC	4 cut(s)	27, 195, 232, 270
MboII	GAAGA	4 cut(s)	55, 76, 161, 169
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	15, 307
MluNI	TGGCCA	1 cut(s)	257
MnlI	CCTC	3 cut(s)	16, 177, 199
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	118, 147, 184
NdeII	GATC	4 cut(s)	27, 195, 232, 270
NlaIII	CATG	2 cut(s)	101, 256
NlaIV	GGNNCC	1 cut(s)	229
NmeAIII	GCCGAG	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	91, 165
Ple19I	CGATCG	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	90, 164
Sau3AI	GATC	4 cut(s)	27, 195, 232, 270
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	79, 152, 189, 213, 282, 296
SfaNI	GCATC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	15, 307
SsiI	CCGC	4 cut(s)	90, 139, 176, 201
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	282
TasI	AATT	2 cut(s)	15, 307
TauI	GCSGC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	1 cut(s)	163
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.