Rh5AG342100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001347
Physical Location & Seq
Reverse (-)
55922705 .. 55924602
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG342100.1

Sequence Viewer

Length: 819 bp
ATGGTTTCTTCTAACTCTGCATCATCCCATGAACCATCTGATTCTCCTCCATCTCGACCTATCCATGTCCCTTTCGCAGAGGGATCTAGTCATGCCCAGCCTCACTCTAGTCCAGAACCTAATCTAGCACCTGAATTTCAACCCCTTTCTGAGTACCCCTTTACTGTTCATCGTGGACCATATTCTGTTCCATTCAATGCTTCTCCACCTATTGTTGACCTCCTTGATGATCCATCTGCTGATCAATCTTCTGACCCAAGCAAGAGATGTCTTGTTGGCCAGATTTTTGGGAATTTTGATGAGACCATTAATCCAGAAGATATTCCTTTTATTTCATCCTCTCAAACTTTACCTATTCCAGACTCTTCTCCTGACTTGCACCCTTATATAGCTCCCATTCCTGAGCCGACTCCGTTGGATGCTACTACCTCACCAGTCATTTCGGCAGCTGTTCCTGAGGATGATTTGGCAGTGGATGAGGAACTCGATCCTGATTTAGAGAATGAAGAACTTGAGGAAGATGTTGAGGTTGTAGAGGTGAGTACTGACTCGTCCTCTTTTGTTTATTCTATACTTTCAGATGTCTCTGTTCTTACTTCAGACACTATTGAGTATATTTACAATCCTTTTTGTGCACCATACCCTGATTTGCTATCTCTTATGGATAATATCAATAATGTTTCTGTCGGTTCTGTTCAAGAGGTCTCCGCTCCTGAACGCGAGAATTATACTTTTCCTTATCGTAGTCCCAGGAAAAGAGGTAGAGAGGATATAGAGCTTTTGGATGCAGAACCTTCTTCTTCCAATGTGCCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

29.64

Weight (kDa)

4.05

Isoelectric Point (pI)

71.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 710
AccII CGCG 1 cut(s) 720
AciI CCGC 1 cut(s) 708
AclWI GGATC 3 cut(s) 91, 224, 482
AcoI YGGCCR 1 cut(s) 277
AcsI RAATTY 2 cut(s) 134, 292
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 155, 544
AgsI TTSAA 3 cut(s) 140, 196, 698
AjnI CCWGG 1 cut(s) 749
AluBI AGCT 3 cut(s) 392, 449, 778
AluI AGCT 3 cut(s) 392, 449, 778
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 3 cut(s) 296, 589, 709
Alw44I GTGCAC 1 cut(s) 633
AlwI GGATC 3 cut(s) 91, 224, 482
AoxI GGCC 1 cut(s) 277
ApaLI GTGCAC 1 cut(s) 633
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 134, 292
AseI ATTAAT 1 cut(s) 309
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 423, 550
AvaII GGWCC 1 cut(s) 176
AxyI CCTNAGG 1 cut(s) 456
BaeGI GKGCMC 1 cut(s) 637
BalI TGGCCA 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 1 cut(s) 458
BccI CCATC 3 cut(s) 43, 58, 241
BciT130I CCWGG 1 cut(s) 751
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 296, 589, 709
BfaI CTAG 3 cut(s) 87, 108, 125
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 751
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 751
BmsI GCATC 3 cut(s) 29, 409, 775
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 533
BsaI GGTCTC 2 cut(s) 296, 709
BsaJI CCNNGG 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 434
Bse21I CCTNAGG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 751
BseDI CCNNGG 1 cut(s) 749
BseGI GGATG 6 cut(s) 23, 335, 424, 466, 481, 790
BseMII CTCAG 3 cut(s) 141, 393, 447
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 458
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 720
BshFI GGCC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 637
BslFI GGGAC 2 cut(s) 53, 732
BsmAI GTCTC 3 cut(s) 296, 589, 709
BsmFI GGGAC 2 cut(s) 53, 732
BsnI GGCC 1 cut(s) 279
Bso31I GGTCTC 2 cut(s) 296, 709
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 4 cut(s) 83, 229, 241, 487
BspACI CCGC 1 cut(s) 708
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 3 cut(s) 142, 394, 448
BspFNI CGCG 1 cut(s) 720
BspPI GGATC 3 cut(s) 91, 224, 482
BspTNI GGTCTC 2 cut(s) 296, 709
BsrBI CCGCTC 1 cut(s) 710
BsrI ACTGG 1 cut(s) 434
BssECI CCNNGG 1 cut(s) 749
BssMI GATC 4 cut(s) 83, 229, 241, 487
Bst2UI CCWGG 1 cut(s) 751
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 370
BstDEI CTNAG 3 cut(s) 150, 402, 456
BstF5I GGATG 6 cut(s) 23, 335, 424, 466, 481, 790
BstFNI CGCG 1 cut(s) 720
BstKTI GATC 4 cut(s) 86, 232, 244, 490
BstMAI GTCTC 3 cut(s) 296, 589, 709
BstMBI GATC 4 cut(s) 83, 229, 241, 487
BstNI CCWGG 1 cut(s) 751
BstSCI CCNGG 1 cut(s) 749
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 1 cut(s) 458
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 83
Bsu36I CCTNAGG 1 cut(s) 456
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 6 cut(s) 23, 335, 424, 466, 481, 790
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 154, 543
CviAII CATG 3 cut(s) 29, 65, 92
CviJI RGCY 6 cut(s) 100, 279, 392, 406, 449, 778
CviKI_1 RGCY 6 cut(s) 100, 279, 392, 406, 449, 778
CviQI GTAC 2 cut(s) 154, 543
DdeI CTNAG 3 cut(s) 150, 402, 456
DpnI GATC 4 cut(s) 85, 231, 243, 489
DpnII GATC 4 cut(s) 83, 229, 241, 487
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco31I GGTCTC 2 cut(s) 296, 709
Eco47I GGWCC 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 582
Eco81I CCTNAGG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 749
FaeI CATG 3 cut(s) 32, 68, 95
FaqI GGGAC 2 cut(s) 53, 732
FatI CATG 3 cut(s) 28, 64, 91
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 6 cut(s) 10, 322, 431, 473, 488, 797
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 3 cut(s) 87, 108, 125
GluI GCNGC 1 cut(s) 447
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 3 cut(s) 32, 68, 95
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 4 cut(s) 41, 362, 409, 548
HphI GGTGA 2 cut(s) 423, 550
Hpy166II GTNNAC 3 cut(s) 176, 217, 635
Hpy188I TCNGA 5 cut(s) 40, 151, 253, 580, 601
Hpy8I GTNNAC 3 cut(s) 176, 217, 635
HpyAV CCTTC 1 cut(s) 804
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 4 cut(s) 20, 379, 635, 788
HpyF3I CTNAG 3 cut(s) 150, 402, 456
Hsp92II CATG 3 cut(s) 32, 68, 95
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 4 cut(s) 83, 229, 241, 487
LmnI GCTCC 2 cut(s) 397, 715
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 3 cut(s) 29, 409, 775
MaeI CTAG 3 cut(s) 87, 108, 125
MalI GATC 4 cut(s) 85, 231, 243, 489
MbiI CCGCTC 1 cut(s) 710
MboI GATC 4 cut(s) 83, 229, 241, 487
MboII GAAGA 7 cut(s) 240, 329, 357, 518, 530, 789, 792
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 637
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 3 cut(s) 134, 292, 724
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 3 cut(s) 356, 403, 542
MmeI TCCRAC 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 321
MscI TGGCCA 1 cut(s) 279
MseI TTAA 1 cut(s) 309
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 751
MvaI CCWGG 1 cut(s) 751
MvnI CGCG 1 cut(s) 720
NdeII GATC 4 cut(s) 83, 229, 241, 487
NlaIII CATG 3 cut(s) 32, 68, 95
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 3 cut(s) 356, 403, 542
PpsI GAGTC 3 cut(s) 356, 403, 542
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 749
PspFI CCCAGC 1 cut(s) 96
PspGI CCWGG 1 cut(s) 749
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 2 cut(s) 155, 544
RsaNI GTAC 2 cut(s) 154, 543
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 4 cut(s) 83, 229, 241, 487
Sau96I GGNCC 1 cut(s) 176
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 3 cut(s) 356, 403, 542
ScrFI CCNGG 1 cut(s) 751
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 3 cut(s) 29, 409, 775
SinI GGWCC 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 3 cut(s) 134, 292, 724
SsiI CCGC 1 cut(s) 708
SspMI CTAG 3 cut(s) 87, 108, 125
StyD4I CCNGG 1 cut(s) 749
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 55, 486
TasI AATT 3 cut(s) 134, 292, 724
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 477
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 45, 158, 324, 519
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 1 cut(s) 477
VneI GTGCAC 1 cut(s) 633
VpaK11BI GGWCC 1 cut(s) 176
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 2 cut(s) 134, 292
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 3 cut(s) 87, 108, 125
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.