Rw5G047230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001347
Physical Location & Seq
Reverse (-)
81747147 .. 81748232
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G047230.1

Sequence Viewer

Length: 324 bp
ATGGTAGCTGCTGCGGCTCCAGATCATGAGCCAGAACATGAGCCGCTTGTCCATCCTCAGGTGAATCCCCAGGAGGGGCTGCAAGATGATGATTTAGCTGCCAATGATGAATTAGACCCAGAGCTTGATAATGATGAAGACGTGGAGGAAGAGATAGAAGTGGTTGAGGATGATGATGAGATCAATAATGGCAATACTGTGGCTCTGATTGATGACTCTAGTCAAATGGGATCCTCTGCTCTGTCTCGTAACATTAGAAAACGAGGACGAGAAGATATTGATAACTTTGGTGCAGAACCTTCTTCTGTAAATATGTCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.72

Weight (kDa)

4.05

Isoelectric Point (pI)

67.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 44
AclWI GGATC 2 cut(s) 225, 238
AfiI CCNNNNNNNGG 3 cut(s) 58, 74, 75
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 3 cut(s) 8, 98, 124
AluI AGCT 3 cut(s) 8, 98, 124
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 2 cut(s) 225, 238
ApeKI GCWGC 4 cut(s) 8, 11, 79, 98
AsuHPI GGTGA 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 57
BamHI GGATCC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 66, 85
BccI CCATC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 219
BisI GCNGC 6 cut(s) 9, 12, 15, 44, 80, 99
BlsI GCNGC 6 cut(s) 10, 13, 16, 45, 81, 100
Bme1390I CCNGG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 18, 232
BmrFI CCNGG 1 cut(s) 71
BoxI GACNNNNGTC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 74, 75
Bse21I CCTNAGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 52, 175
BseLI CCNNNNNNNGG 3 cut(s) 58, 74, 75
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 66, 85
BsgI GTGCAG 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 58, 74, 75
BsmAI GTCTC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 22, 180, 230
BspACI CCGC 2 cut(s) 14, 44
BspCNI CTCAG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 2 cut(s) 18, 232
BspPI GGATC 2 cut(s) 225, 238
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 22, 180, 230
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 2 cut(s) 52, 175
BstKTI GATC 3 cut(s) 25, 183, 233
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 3 cut(s) 22, 180, 230
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 71
BstPAI GACNNNNGTC 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 66, 85
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 57
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 2 cut(s) 52, 175
CciI TCATGA 1 cut(s) 25
CviAII CATG 2 cut(s) 26, 38
CviJI RGCY 8 cut(s) 8, 17, 31, 43, 79, 98, 124, 203
CviKI_1 RGCY 8 cut(s) 8, 17, 31, 43, 79, 98, 124, 203
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 24, 182, 232
DpnII GATC 3 cut(s) 22, 180, 230
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 29, 41
FaiI YATR 3 cut(s) 27, 39, 314
FatI CATG 2 cut(s) 25, 37
Fnu4HI GCNGC 6 cut(s) 9, 12, 15, 44, 80, 99
FokI GGATG 2 cut(s) 39, 182
Fsp4HI GCNGC 6 cut(s) 9, 12, 15, 44, 80, 99
FspBI CTAG 1 cut(s) 219
GluI GCNGC 6 cut(s) 9, 12, 15, 44, 80, 99
Hin1II CATG 2 cut(s) 29, 41
HinfI GANTC 2 cut(s) 64, 215
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 207, 319
Hpy188III TCNNGA 2 cut(s) 20, 26
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 82, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 29, 41
Kzo9I GATC 3 cut(s) 22, 180, 230
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 33, 44, 45, 56, 83, 132
Lsp1109I GCAGC 2 cut(s) 66, 85
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 248
MalI GATC 3 cut(s) 24, 182, 232
MboI GATC 3 cut(s) 22, 180, 230
MboII GAAGA 4 cut(s) 149, 161, 284, 294
MflI RGATCY 1 cut(s) 230
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 6 cut(s) 66, 67, 139, 160, 244, 257
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 3 cut(s) 22, 180, 230
NlaIII CATG 2 cut(s) 29, 41
NlaIV GGNNCC 2 cut(s) 18, 232
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 6 cut(s) 10, 13, 16, 45, 81, 100
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PshAI GACNNNNGTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 18, 232
PsuI RGATCY 1 cut(s) 230
SatI GCNGC 6 cut(s) 9, 12, 15, 44, 80, 99
Sau3AI GATC 3 cut(s) 22, 180, 230
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 71
SetI ASST 6 cut(s) 10, 63, 100, 126, 144, 301
Sse9I AATT 1 cut(s) 110
SsiI CCGC 2 cut(s) 14, 44
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 144
TasI AATT 1 cut(s) 110
TauI GCSGC 2 cut(s) 17, 46
TfiI GAWTC 1 cut(s) 64
TseI GCWGC 4 cut(s) 8, 11, 79, 98
TspDTI ATGAA 2 cut(s) 123, 150
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.