RLG00000008699

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001347
Physical Location & Seq
Forward (+)
35353111 .. 35353641
531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008699

Sequence Viewer

Length: 429 bp
ATGACTCTTAGGTTCAATATAGAGGTCGTTCTGCTTCTGGACCGGTCTTACCTAGACATGGAGTCACTTTTGTGGATGCAGCCAGAAATCTTAATGAGACCATGCATCATTCACCTTCACCATTCAATTCTGTCCCCAGATCAAGCACCCCCTACTGATCGGACTGTTCCAACCCTGCCCACCTCTCAAGCCCTTGTAGTGGCTGTAGCAAAACCTCAACCTCTAGCTGTCATTCCTCCTCAGGATGATCCTCATCTCCACATCAAAGATGAAGATTTGATAGCTGATGAAGACCTTGACCTCGAGTTTGAAGATGACCTTGAGGAAAACACTGAGGTGGTAGAGGTAAGCTCTGACAATTCTTCCTTTACTATTACTCTGGACTCTGACATCTCTGTCAATTCTGTTCAGGAGCCTCAATATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.05

Weight (kDa)

4.1

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AclWI GGATC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 58, 199
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 3 cut(s) 16, 126, 311
AhdI GACNNNNNGTC 1 cut(s) 61
AleI CACNNNNGTG 2 cut(s) 70, 335
AluBI AGCT 3 cut(s) 227, 284, 351
AluI AGCT 3 cut(s) 227, 284, 351
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AsiGI ACCGGT 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 104, 110
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 53, 224
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 40
BmeRI GACNNNNNGTC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 414
BmsI GCATC 2 cut(s) 66, 114
BpiI GAAGAC 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpuEI CTTGAG 2 cut(s) 171, 341
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 199
Bse118I RCCGGY 1 cut(s) 42
Bse21I CCTNAGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 252
BseGI GGATG 2 cut(s) 81, 250
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 58, 199
BseMII CTCAG 2 cut(s) 254, 324
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 91
BshTI ACCGGT 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 58, 199
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 302
Bsp143I GATC 3 cut(s) 139, 157, 247
BspCNI CTCAG 2 cut(s) 253, 325
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 3 cut(s) 139, 157, 247
Bst4CI ACNGT 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 8, 240, 333
BstF5I GGATG 2 cut(s) 81, 250
BstKTI GATC 3 cut(s) 142, 160, 250
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 139, 157, 247
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 81, 250
BtsIMutI CAGTG 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 2 cut(s) 58, 102
CviJI RGCY 7 cut(s) 82, 191, 203, 227, 284, 351, 415
CviKI_1 RGCY 7 cut(s) 82, 191, 203, 227, 284, 351, 415
DdeI CTNAG 3 cut(s) 8, 240, 333
DpnI GATC 3 cut(s) 141, 159, 249
DpnII GATC 3 cut(s) 139, 157, 247
DrdI GACNNNNNNGTC 1 cut(s) 395
DriI GACNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1105I GACNNNNNGTC 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 302
EcoT22I ATGCAT 1 cut(s) 107
FaeI CATG 2 cut(s) 61, 105
FaiI YATR 4 cut(s) 20, 59, 103, 423
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 57, 101
Fnu4HI GCNGC 1 cut(s) 80
FokI GGATG 2 cut(s) 88, 257
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 2 cut(s) 53, 224
GluI GCNGC 1 cut(s) 80
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 61, 105
HinfI GANTC 3 cut(s) 4, 62, 383
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 104, 110
Hpy188I TCNGA 3 cut(s) 162, 355, 388
Hpy188III TCNNGA 4 cut(s) 38, 242, 380, 410
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 79, 105
HpyF3I CTNAG 3 cut(s) 8, 240, 333
Hsp92II CATG 2 cut(s) 61, 105
Kzo9I GATC 3 cut(s) 139, 157, 247
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 8 cut(s) 23, 56, 96, 150, 188, 227, 365, 395
Lsp1109I GCAGC 1 cut(s) 91
LweI GCATC 2 cut(s) 66, 114
MaeI CTAG 2 cut(s) 53, 224
MaeIII GTNAC 1 cut(s) 63
MalI GATC 3 cut(s) 141, 159, 249
MboI GATC 3 cut(s) 139, 157, 247
MboII GAAGA 4 cut(s) 284, 302, 323, 354
MluCI AATT 3 cut(s) 126, 358, 400
MlyI GAGTC 2 cut(s) 71, 377
MmeI TCCRAC 1 cut(s) 194
Mph1103I ATGCAT 1 cut(s) 107
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 2 cut(s) 70, 335
MspI CCGG 1 cut(s) 43
NdeII GATC 3 cut(s) 139, 157, 247
NlaIII CATG 2 cut(s) 61, 105
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 107
OliI CACNNNNGTG 2 cut(s) 70, 335
PaeR7I CTCGAG 1 cut(s) 302
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 2 cut(s) 70, 377
PpsI GAGTC 2 cut(s) 70, 377
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 302
RseI CAYNNNNRTG 2 cut(s) 70, 335
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 3 cut(s) 139, 157, 247
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 71, 377
SfaNI GCATC 2 cut(s) 66, 114
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 302
SinI GGWCC 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 70, 335
SmlI CTYRAG 3 cut(s) 186, 302, 320
SmoI CTYRAG 3 cut(s) 186, 302, 320
Sse9I AATT 3 cut(s) 126, 358, 400
SspMI CTAG 2 cut(s) 53, 224
TaaI ACNGT 1 cut(s) 166
TaqI TCGA 1 cut(s) 303
TasI AATT 3 cut(s) 126, 358, 400
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 285, 303
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 302
XspI CTAG 2 cut(s) 53, 224
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.