RLG00000000642

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
3014774 .. 3016268
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000642

Sequence Viewer

Length: 645 bp
ATGTTGAGTCTCGCTGTGCAGCTAGCTGGAAAGACTCATCCTTTCCCTGCTCGAGGACATCCTGTGGCTAGATCTGCCTTTCAAAGACCTTGTGTAACCTTTGTTGATACTGCTCATAATCTGCATGAGGCTTTGGCTTCCTCTAATGGCTTCCCTAGTCATACTAGGACAACTCATCATGAGGAGGATATATATACTACACAATCCAATATTTCTCAAGCTTTCATTGTTGCTGTTGAGGAGCCTCTGCCGTTAGCTATTATACCACCAGATAACAATCCCAATCTTCATATCAATGACGATGACCTGGCAGCTAATGAGGAATTGGAAGCCGATCTTAATGAAGCTATTGATGAGAATGTGGAAGTGGAGGAGGGAAGCTCTGATACTCTCTCTTTCTCTGCTTCTTCTTTAGATTTTGACTTGTCAATAATTACATCTCATACTGTTGAGTCTATGATGATCTATAATCCTACTTCTGCTCTATACCCTAATTTTCTCAATACTTATCACCATAGCATTAATAGCTCTATCAACTCTGTTCAGGAGGCTGCTCTTGAACTAGCAATGTATGATCCTAATTTGGAAAATCTTGATAATTCTGTGGATGTTGTAACTATGGCGGTTTCTGCTCTTCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.37

Weight (kDa)

4.3

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 623
AclWI GGATC 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 83, 560
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 8 cut(s) 22, 26, 221, 257, 314, 347, 381, 528
AluI AGCT 8 cut(s) 22, 26, 221, 257, 314, 347, 381, 528
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 569
Ama87I CYCGRG 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 19, 311, 551
AseI ATTAAT 1 cut(s) 522
AsuHPI GGTGA 1 cut(s) 503
AsuNHI GCTAGC 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 51
BarI GAAGNNNNNNTAC 2 cut(s) 370, 402
BbvI GCAGC 3 cut(s) 31, 323, 538
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 5 cut(s) 23, 69, 156, 165, 563
BglII AGATCT 1 cut(s) 71
BisI GCNGC 3 cut(s) 20, 312, 552
BlsI GCNGC 3 cut(s) 21, 313, 553
Bme1390I CCNGG 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 308
BmtI GCTAGC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpuEI CTTGAG 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 308
BseGI GGATG 3 cut(s) 37, 58, 613
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 573
BseRI GAGGAG 3 cut(s) 197, 254, 386
BseXI GCAGC 3 cut(s) 31, 323, 538
BsgI GTGCAG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 14
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 4 cut(s) 71, 334, 462, 574
BspACI CCGC 1 cut(s) 623
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 569
BspQI GCTCTTC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 573
BssMI GATC 4 cut(s) 71, 334, 462, 574
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 24
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 37, 58, 613
BstKTI GATC 4 cut(s) 74, 337, 465, 577
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 4 cut(s) 71, 334, 462, 574
BstMWI GCNNNNNNNGC 3 cut(s) 74, 525, 629
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 31, 323, 538
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtsCI GGATG 3 cut(s) 37, 58, 613
Cac8I GCNNGC 1 cut(s) 24
CciI TCATGA 1 cut(s) 178
CviAII CATG 2 cut(s) 125, 179
DpnI GATC 4 cut(s) 73, 336, 464, 576
DpnII GATC 4 cut(s) 71, 334, 462, 574
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 51
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 306
FaeI CATG 2 cut(s) 128, 182
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 2 cut(s) 124, 178
Fnu4HI GCNGC 3 cut(s) 20, 312, 552
FokI GGATG 3 cut(s) 24, 45, 620
Fsp4HI GCNGC 3 cut(s) 20, 312, 552
FspBI CTAG 5 cut(s) 23, 69, 156, 165, 563
GluI GCNGC 3 cut(s) 20, 312, 552
Hin1II CATG 2 cut(s) 128, 182
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 3 cut(s) 7, 34, 452
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 4 cut(s) 179, 545, 557, 593
HpyCH4III ACNGT 1 cut(s) 448
HpyCH4V TGCA 2 cut(s) 19, 124
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 525, 629
Hsp92II CATG 2 cut(s) 128, 182
Kzo9I GATC 4 cut(s) 71, 334, 462, 574
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 7 cut(s) 12, 60, 75, 282, 293, 320, 530
Lsp1109I GCAGC 3 cut(s) 31, 323, 538
MaeI CTAG 5 cut(s) 23, 69, 156, 165, 563
MaeIII GTNAC 2 cut(s) 94, 613
MalI GATC 4 cut(s) 73, 336, 464, 576
MboI GATC 4 cut(s) 71, 334, 462, 574
MboII GAAGA 3 cut(s) 278, 399, 626
MflI RGATCY 1 cut(s) 71
MluCI AATT 5 cut(s) 323, 432, 493, 580, 598
MlyI GAGTC 3 cut(s) 16, 28, 461
MseI TTAA 2 cut(s) 339, 522
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 3 cut(s) 74, 525, 629
NdeII GATC 4 cut(s) 71, 334, 462, 574
NheI GCTAGC 1 cut(s) 22
NlaIII CATG 2 cut(s) 128, 182
NlaIV GGNNCC 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 51
PagI TCATGA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 639
PkrI GCNGC 3 cut(s) 21, 313, 553
PleI GAGTC 3 cut(s) 15, 28, 460
PpsI GAGTC 3 cut(s) 15, 28, 460
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 243
PspXI VCTCGAGB 1 cut(s) 51
PsuI RGATCY 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 2 cut(s) 339, 522
SatI GCNGC 3 cut(s) 20, 312, 552
Sau3AI GATC 4 cut(s) 71, 334, 462, 574
SchI GAGTC 3 cut(s) 16, 28, 461
ScrFI CCNGG 1 cut(s) 308
Sfr274I CTCGAG 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 2 cut(s) 51, 216
SmoI CTYRAG 2 cut(s) 51, 216
Sse9I AATT 5 cut(s) 323, 432, 493, 580, 598
SsiI CCGC 1 cut(s) 623
SspI AATATT 1 cut(s) 211
SspMI CTAG 5 cut(s) 23, 69, 156, 165, 563
StyD4I CCNGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 448
TaqI TCGA 1 cut(s) 52
TasI AATT 5 cut(s) 323, 432, 493, 580, 598
Tru1I TTAA 2 cut(s) 339, 522
Tru9I TTAA 2 cut(s) 339, 522
TseI GCWGC 3 cut(s) 19, 311, 551
TspDTI ATGAA 3 cut(s) 214, 278, 357
VspI ATTAAT 1 cut(s) 522
XagI CCTNNNNNAGG 1 cut(s) 51
XhoI CTCGAG 1 cut(s) 51
XspI CTAG 5 cut(s) 23, 69, 156, 165, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.