Rh2DG375900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
53766092 .. 53766625
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG375900.1

Sequence Viewer

Length: 534 bp
ATGGGTACTCTGTTTTGCACGTTGGGCGTTTTTCTACTTCTTATCTCGACTGGGTTTCTAAACTCCCTTCAACAGAGAAAGCAAGTTGTTGATCTTTCCATTTTGTCTATGACGGTGGCAATTGAGGTAGTGGAGGTGAGCTGTCACTCTTCTTTTAATTCTCCTTTGGACCCTGATAACTCATTTATAATAGCAGTTACTGTTGGATCTCTTTATAATCCCTATGCTCCTCCGTATCATGGTTTCTTACTTCAACTTGAGACTACATGTAATAGCTCTGTTAATAGTAGTTTGGCTAATTATTATCAATCTGGTCAACTGGATTTTGCTTTACTCTCTCGCAATATTAGGAAACAGGGACGGGATGATCTTCAGAACCTGACTGCAGAACCATCATTTTCTAATATGCCAGAATTAGTACTCTGTTGGAATTGTCGTGGCTGTTCACGACAAGGTTTTCTGTCCCAAGCTTTCTTTTTGAGAACCTTTACATCAAAAGCTAGTATTCTGTCTGTTAGATATTATGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.72

Weight (kDa)

7.58

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 216
AclWI GGATC 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 2 cut(s) 7, 420
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 71, 254
AluBI AGCT 4 cut(s) 141, 276, 470, 500
AluI AGCT 4 cut(s) 141, 276, 470, 500
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 214
AlwNI CAGNNNCTG 2 cut(s) 200, 379
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 169
BccI CCATC 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 384
BmcAI AGTACT 1 cut(s) 420
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 55, 324
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 2 cut(s) 55, 324
BseRI GAGGAG 1 cut(s) 219
BslFI GGGAC 2 cut(s) 372, 448
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 2 cut(s) 372, 448
Bsp143I GATC 3 cut(s) 91, 206, 367
BspLI GGNNCC 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 55, 324
BssMI GATC 3 cut(s) 91, 206, 367
Bst4CI ACNGT 2 cut(s) 115, 202
Bst6I CTCTTC 1 cut(s) 154
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 3 cut(s) 94, 209, 370
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 91, 206, 367
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BtsCI GGATG 1 cut(s) 370
CaiI CAGNNNCTG 2 cut(s) 200, 379
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 6, 419
CviAII CATG 2 cut(s) 239, 267
CviJI RGCY 6 cut(s) 141, 276, 296, 441, 470, 500
CviKI_1 RGCY 6 cut(s) 141, 276, 296, 441, 470, 500
CviQI GTAC 2 cut(s) 6, 419
DpnI GATC 3 cut(s) 93, 208, 369
DpnII GATC 3 cut(s) 91, 206, 367
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 356
FaeI CATG 2 cut(s) 242, 270
FaiI YATR 8 cut(s) 110, 188, 216, 225, 240, 268, 407, 525
FaqI GGGAC 2 cut(s) 372, 448
FatI CATG 2 cut(s) 238, 266
FokI GGATG 1 cut(s) 377
FspBI CTAG 1 cut(s) 501
Hin1II CATG 2 cut(s) 242, 270
HincII GTYRAC 1 cut(s) 317
HindII GTYRAC 1 cut(s) 317
HindIII AAGCTT 1 cut(s) 468
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 317, 446
Hpy188I TCNGA 1 cut(s) 375
Hpy188III TCNNGA 2 cut(s) 46, 447
Hpy8I GTNNAC 2 cut(s) 317, 446
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 115, 202
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 18, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 2 cut(s) 242, 270
Kzo9I GATC 3 cut(s) 91, 206, 367
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 7 cut(s) 36, 186, 297, 305, 341, 392, 423
MaeI CTAG 1 cut(s) 501
MaeII ACGT 1 cut(s) 20
MaeIII GTNAC 2 cut(s) 143, 196
MalI GATC 3 cut(s) 93, 208, 369
MboI GATC 3 cut(s) 91, 206, 367
MboII GAAGA 2 cut(s) 141, 362
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 206
MluCI AATT 5 cut(s) 120, 157, 298, 413, 430
MmeI TCCRAC 2 cut(s) 184, 407
MnlI CCTC 3 cut(s) 118, 127, 240
MseI TTAA 3 cut(s) 156, 282, 528
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 3 cut(s) 91, 206, 367
NlaIII CATG 2 cut(s) 242, 270
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 270
PciI ACATGT 1 cut(s) 266
PscI ACATGT 1 cut(s) 266
PsiI TTATAA 2 cut(s) 188, 216
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 169
PstI CTGCAG 1 cut(s) 388
PstNI CAGNNNCTG 2 cut(s) 200, 379
PsuI RGATCY 1 cut(s) 206
RsaI GTAC 2 cut(s) 7, 420
RsaNI GTAC 2 cut(s) 6, 419
SaqAI TTAA 3 cut(s) 156, 282, 528
Sau3AI GATC 3 cut(s) 91, 206, 367
Sau96I GGNCC 1 cut(s) 169
ScaI AGTACT 1 cut(s) 420
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 5 cut(s) 120, 157, 298, 413, 430
SspI AATATT 1 cut(s) 346
SspMI CTAG 1 cut(s) 501
TaaI ACNGT 2 cut(s) 115, 202
TaiI ACGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 47
TasI AATT 5 cut(s) 120, 157, 298, 413, 430
TatI WGTACW 1 cut(s) 418
Tru1I TTAA 3 cut(s) 156, 282, 528
Tru9I TTAA 3 cut(s) 156, 282, 528
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspGWI ACGGA 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 169
XceI RCATGY 1 cut(s) 270
XspI CTAG 1 cut(s) 501
ZrmI AGTACT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.