Rroxscaffold_5G00352320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001347
Physical Location & Seq
Reverse (-)
29321016 .. 29321679
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352320.1

Sequence Viewer

Length: 486 bp
ATGACTCTTAGCTTCAATATAGAGGTCATTCTGCTTCTGGACCGGTCTTACGTAGACCTGGAGTCACTTTTGTGGATGCAGCCAGAAATCTTAATGAGACCATGCATCGTTCACCTTCACCATTCAATTCTGTCCCCAGATCAAGCACCCCCTACTGATCGGACTGATGATCCTCATCTGCACATCAATGATGAAGATTTGACAGCTGATGAAGACCTTGACCTAGAGTTTGAAGATGACCTTGAGGAAAACATTGAGGTGGTAGAGGTCAGCTCTGATAATTCTTCCTTTACTATTTCTCTGGACTCTGACATGTCAGTGATTACTTCTGATTCTGTAGAATCGTTGATGGTGTATAATCCTACATTTGCTCCATATTCTGAGTTTTTAATGTCTGCTCTTCCTTTCCGTAGCCCCAGAAAGAGAGGAAGAGATGTTATTGAGAATATGGCAGCAGAACCATCTTCTTCTTATCTGCCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.32

Weight (kDa)

4.06

Isoelectric Point (pI)

77.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AclWI GGATC 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 312
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 3 cut(s) 16, 126, 233
AhdI GACNNNNNGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 57
AleI CACNNNNGTG 1 cut(s) 70
AluBI AGCT 3 cut(s) 12, 206, 273
AluI AGCT 3 cut(s) 12, 206, 273
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 164
ApeKI GCWGC 2 cut(s) 79, 452
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AsiGI ACCGGT 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 104, 110
AvaII GGWCC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 91, 464
BccI CCATC 2 cut(s) 343, 469
BciT130I CCWGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 80, 453
BlsI GCNGC 2 cut(s) 81, 454
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 40
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 66, 114
BpiI GAAGAC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 257, 289
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bse118I RCCGGY 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 174
BseMII CTCAG 1 cut(s) 372
BseXI GCAGC 2 cut(s) 91, 464
BsgI GTGCAG 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 118
Bso31I GGTCTC 1 cut(s) 91
Bsp143I GATC 3 cut(s) 139, 157, 169
BspCNI CTCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 3 cut(s) 139, 157, 169
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 405, 424
BstBAI YACGTR 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 8, 381
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 3 cut(s) 142, 160, 172
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 3 cut(s) 139, 157, 169
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 336
BstSNI TACGTA 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 91, 464
BstV2I GAAGAC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 324
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 2 cut(s) 102, 313
CviJI RGCY 5 cut(s) 12, 82, 206, 273, 414
CviKI_1 RGCY 5 cut(s) 12, 82, 206, 273, 414
DdeI CTNAG 2 cut(s) 8, 381
DpnI GATC 3 cut(s) 141, 159, 171
DpnII GATC 3 cut(s) 139, 157, 169
DriI GACNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 405, 424
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 2 cut(s) 405, 424
Eco105I TACGTA 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 107
FaeI CATG 2 cut(s) 105, 316
FaiI YATR 6 cut(s) 20, 103, 314, 357, 376, 449
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 118
FatI CATG 2 cut(s) 101, 312
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 80, 453
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 2 cut(s) 80, 453
FspBI CTAG 1 cut(s) 224
GluI GCNGC 2 cut(s) 80, 453
GsuI CTGGAG 1 cut(s) 80
HapII CCGG 1 cut(s) 43
Hin1II CATG 2 cut(s) 105, 316
HinfI GANTC 5 cut(s) 4, 62, 305, 332, 341
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 104, 110
Hpy166II GTNNAC 2 cut(s) 55, 112
Hpy188I TCNGA 5 cut(s) 162, 277, 310, 331, 382
Hpy188III TCNNGA 2 cut(s) 38, 302
Hpy8I GTNNAC 2 cut(s) 55, 112
HpyAV CCTTC 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 79, 105, 181
HpyF3I CTNAG 2 cut(s) 8, 381
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 105, 316
Kzo9I GATC 3 cut(s) 139, 157, 169
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 8 cut(s) 23, 44, 56, 71, 96, 150, 287, 430
Lsp1109I GCAGC 2 cut(s) 91, 464
LweI GCATC 2 cut(s) 66, 114
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 63
MalI GATC 3 cut(s) 141, 159, 171
MboI GATC 3 cut(s) 139, 157, 169
MboII GAAGA 8 cut(s) 206, 224, 245, 276, 392, 441, 456, 459
MluCI AATT 2 cut(s) 126, 280
MlyI GAGTC 2 cut(s) 71, 299
MnlI CCTC 6 cut(s) 16, 183, 238, 250, 259, 419
Mph1103I ATGCAT 1 cut(s) 107
MseI TTAA 2 cut(s) 92, 389
MslI CAYNNNNRTG 4 cut(s) 70, 186, 257, 317
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 59
NdeII GATC 3 cut(s) 139, 157, 169
NlaIII CATG 2 cut(s) 105, 316
NmuCI GTSAC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 107
NspI RCATGY 1 cut(s) 316
OliI CACNNNNGTG 1 cut(s) 70
PciI ACATGT 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 332, 341
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 2 cut(s) 81, 454
PleI GAGTC 2 cut(s) 70, 299
PpsI GAGTC 2 cut(s) 70, 299
Ppu21I YACGTR 1 cut(s) 52
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspPI GGNCC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 206
RseI CAYNNNNRTG 4 cut(s) 70, 186, 257, 317
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 92, 389
SatI GCNGC 2 cut(s) 80, 453
Sau3AI GATC 3 cut(s) 139, 157, 169
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 71, 299
ScrFI CCNGG 1 cut(s) 59
SfaNI GCATC 2 cut(s) 66, 114
SfcI CTRYAG 1 cut(s) 336
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 4 cut(s) 70, 186, 257, 317
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SnaBI TACGTA 1 cut(s) 52
Sse9I AATT 2 cut(s) 126, 280
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 57
TaiI ACGT 1 cut(s) 54
TasI AATT 2 cut(s) 126, 280
TfiI GAWTC 2 cut(s) 332, 341
Tru1I TTAA 2 cut(s) 92, 389
Tru9I TTAA 2 cut(s) 92, 389
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 2 cut(s) 79, 452
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 207, 225
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 40
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.