Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

42366230 .. 42367255

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG388400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGAGGAGGGTTGATATGAATAAAGAGGCGATCGTGGTCTACACGGGCCTATCTCCGGCAACCTTCTTCACGCTCCTGGCTCTGCTCTTCGCCGCTTACCATGTCCTTTCTGGGCTTTTTGGGCCGTTCGAGACCCACAACCGCCCCAGGAGCTTGGAGGAGATGCAACCTCTTCCGCCGCCGGTCCAGCTCGGCGAGATCACCGCCGATGAGCTCAAGCAGTACGACGGCTGCGATCCCAAGAAGCCTCTGCCCATGGCCATCAAGTCTCAGATCTATGACGTGTCTCAGAGCAGTGGGTGTTGTTTGTTGAGTCTCCGGTGCGCCGCTGTGTCTTCGCCGGATGAGGGGTCTTGTAGTGACGCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

124

Amino Acids

13.52

Weight (kDa)

5.27

Isoelectric Point (pI)

63.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	6 cut(s)	96, 145, 179, 182, 207, 330
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	2 cut(s)	58, 350
AflIII	ACRYGT	1 cut(s)	285
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	78, 149
AluBI	AGCT	3 cut(s)	156, 193, 217
AluI	AGCT	3 cut(s)	156, 193, 217
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	4 cut(s)	128, 276, 294, 323
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	3 cut(s)	49, 125, 261
ApeKI	GCWGC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	49, 125, 187
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	2 cut(s)	112, 247
BciT130I	CCWGG	2 cut(s)	80, 151
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	4 cut(s)	128, 276, 294, 323
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	4 cut(s)	96, 182, 235, 330
BlsI	GCNGC	4 cut(s)	97, 183, 236, 331
Bme1390I	CCNGG	3 cut(s)	80, 151, 370
Bme18I	GGWCC	1 cut(s)	187
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	49, 125, 187
BmrFI	CCNGG	3 cut(s)	80, 151, 370
BmsI	GCATC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	370
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	149, 258
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 350
Bse118I	RCCGGY	1 cut(s)	184
BseBI	CCWGG	2 cut(s)	80, 151
BseDI	CCNNGG	2 cut(s)	149, 258
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	58, 350
BseMII	CTCAG	2 cut(s)	287, 305
BseRI	GAGGAG	2 cut(s)	22, 176
BseXI	GCAGC	1 cut(s)	221
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	51, 127, 263
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	5 cut(s)	59, 185, 322, 344, 370
BslI	CCNNNNNNNGG	2 cut(s)	58, 350
BsmAI	GTCTC	4 cut(s)	128, 276, 294, 323
BsnI	GGCC	3 cut(s)	51, 127, 263
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	33, 201, 238, 276
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	6 cut(s)	96, 145, 179, 182, 207, 330
BspANI	GGCC	3 cut(s)	51, 127, 263
BspCNI	CTCAG	2 cut(s)	286, 304
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	184
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	149, 258
BssMI	GATC	4 cut(s)	33, 201, 238, 276
BssNI	GRCGYC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	80, 151
Bst6I	CTCTTC	2 cut(s)	95, 180
BstACI	GRCGYC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	273, 291
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	4 cut(s)	36, 204, 241, 279
BstMAI	GTCTC	4 cut(s)	128, 276, 294, 323
BstMBI	GATC	4 cut(s)	33, 201, 238, 276
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 153, 190
BstNI	CCWGG	2 cut(s)	80, 151
BstSCI	CCNGG	3 cut(s)	78, 149, 368
BstV1I	GCAGC	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	276
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	51, 127, 263
BtgI	CCRYGG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	352
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	304
CfoI	GCGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	3 cut(s)	49, 125, 187
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	104, 259
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	273, 291
DpnI	GATC	4 cut(s)	35, 203, 240, 278
DpnII	GATC	4 cut(s)	33, 201, 238, 276
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	95, 180
EarI	CTCTTC	2 cut(s)	95, 180
EciI	GGCGGA	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	78, 149
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	107, 262
FaiI	YATR	4 cut(s)	20, 105, 260, 282
FatI	CATG	2 cut(s)	103, 258
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	4 cut(s)	96, 182, 235, 330
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	96, 182, 235, 330
GlaI	GCGC	1 cut(s)	328
GluI	GCNGC	4 cut(s)	96, 182, 235, 330
HaeIII	GGCC	3 cut(s)	51, 127, 263
HapII	CCGG	5 cut(s)	59, 185, 322, 344, 370
HhaI	GCGC	1 cut(s)	329
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	2 cut(s)	107, 262
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	5 cut(s)	59, 185, 322, 344, 370
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	276, 294
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 153, 190
HpyF3I	CTNAG	2 cut(s)	273, 291
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	107, 262
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	4 cut(s)	33, 201, 238, 276
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	81, 153
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	156
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	4 cut(s)	35, 203, 240, 278
MboI	GATC	4 cut(s)	33, 201, 238, 276
MboII	GAAGA	4 cut(s)	61, 82, 167, 330
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	263
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	6 cut(s)	3, 22, 154, 183, 261, 343
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	5 cut(s)	59, 185, 322, 344, 370
MspR9I	CCNGG	3 cut(s)	80, 151, 370
MvaI	CCWGG	2 cut(s)	80, 151
MwoI	GCNNNNNNNGC	3 cut(s)	124, 153, 190
NciI	CCSGG	1 cut(s)	370
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	4 cut(s)	33, 201, 238, 276
NlaIII	CATG	2 cut(s)	107, 262
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	97, 183, 236, 331
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	78, 149
PspGI	CCWGG	2 cut(s)	78, 149
PspPI	GGNCC	3 cut(s)	49, 125, 187
PsuI	RGATCY	1 cut(s)	276
PvuI	CGATCG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	4 cut(s)	96, 182, 235, 330
Sau3AI	GATC	4 cut(s)	33, 201, 238, 276
Sau96I	GGNCC	3 cut(s)	49, 125, 187
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	80, 151, 370
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	68, 158, 175, 195, 219, 288
SfaNI	GCATC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
SsiI	CCGC	6 cut(s)	96, 145, 179, 182, 207, 330
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	78, 149, 368
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	132
TauI	GCSGC	3 cut(s)	98, 184, 332
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	234
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.