Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

23775596 .. 23776424

Gene Structure 829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG211800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCGAGTTTGGATTTTCGAGGAGCGAGTTCTAGACAAGTCATCAACTCACCGGAACAGTGGAGTTTGATTAGATGCATGTGTTTCTTTGCTACAAGATTCCGCAGGTTTGGCCACCGAGGATTAAGGCGACGAAGTTTTGATCAGCTACCGAGGCTGCTCTATGCATCATTGATGGCAAGGGTTGATATGAATAAAAAGGAGGCGATCGTGGTCTACACGGGCCTATCTCCGGCGACCTTTTTCAAGCTCCTGGCTCTGCTCTTCGCCGCTTACCATGTCCTTTCTGGGCTTTTTAGGCCGTCTAAGACCCACAACCACCCCAGGAGCTTGGAGGAGATGCAGCCTCTTTCACCGCCGGTCCAGCTCGGCGAGATCACCCCCGAGGAGCTCAAGCAGTATGACGGCTCCGATCCCAAGAAGGCTCTGCTCATGGCCATCAAGTGTCAGATCTATGACGTGTCTCAGAGTAGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

159

Amino Acids

18.27

Weight (kDa)

9.85

Isoelectric Point (pI)

69.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	3 cut(s)	103, 270, 356
AclWI	GGATC	1 cut(s)	407
AcoI	YGGCCR	2 cut(s)	112, 435
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	252, 323
AluBI	AGCT	5 cut(s)	148, 250, 330, 367, 391
AluI	AGCT	5 cut(s)	148, 250, 330, 367, 391
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	4 cut(s)	112, 223, 299, 435
ApeKI	GCWGC	2 cut(s)	157, 343
AspS9I	GGNCC	2 cut(s)	223, 361
AsuHPI	GGTGA	3 cut(s)	42, 345, 370
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	361
BalI	TGGCCA	2 cut(s)	114, 437
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	144, 355
BccI	CCATC	2 cut(s)	169, 446
BceAI	ACGGC	2 cut(s)	286, 421
BciT130I	CCWGG	2 cut(s)	254, 325
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	96
BglII	AGATCT	1 cut(s)	450
BisI	GCNGC	3 cut(s)	158, 270, 344
BlsI	GCNGC	3 cut(s)	159, 271, 345
Bme1390I	CCNGG	2 cut(s)	254, 325
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	223, 361
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	254, 325
BmsI	GCATC	3 cut(s)	65, 176, 330
BpuEI	CTTGAG	1 cut(s)	377
BsaJI	CCNNGG	4 cut(s)	118, 152, 323, 384
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	254, 325
BseDI	CCNNGG	4 cut(s)	118, 152, 323, 384
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	479
BseRI	GAGGAG	3 cut(s)	36, 350, 401
BseXI	GCAGC	2 cut(s)	144, 355
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	114, 225, 301, 437
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	3 cut(s)	53, 233, 359
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	468
BsnI	GGCC	4 cut(s)	114, 225, 301, 437
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	5 cut(s)	142, 207, 375, 412, 450
BspACI	CCGC	3 cut(s)	103, 270, 356
BspANI	GGCC	4 cut(s)	114, 225, 301, 437
BspCNI	CTCAG	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	409
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	4 cut(s)	118, 152, 323, 384
BssMI	GATC	5 cut(s)	142, 207, 375, 412, 450
Bst2UI	CCWGG	2 cut(s)	254, 325
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	306, 465
BstKTI	GATC	5 cut(s)	145, 210, 378, 415, 453
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	5 cut(s)	142, 207, 375, 412, 450
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 154, 298, 364
BstNI	CCWGG	2 cut(s)	254, 325
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	252, 323
BstV1I	GCAGC	2 cut(s)	144, 355
BstX2I	RGATCY	1 cut(s)	450
BstXI	CCANNNNNNTGG	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	450
BsuRI	GGCC	4 cut(s)	114, 225, 301, 437
BtrI	CACGTC	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	223, 361
CviAII	CATG	3 cut(s)	79, 278, 433
DdeI	CTNAG	2 cut(s)	306, 465
DpnI	GATC	5 cut(s)	144, 209, 377, 414, 452
DpnII	GATC	5 cut(s)	142, 207, 375, 412, 450
EaeI	YGGCCR	2 cut(s)	112, 435
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	252, 323
EcoT22I	ATGCAT	2 cut(s)	80, 169
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	3 cut(s)	82, 281, 436
FaiI	YATR	7 cut(s)	80, 165, 191, 279, 402, 434, 456
FatI	CATG	3 cut(s)	78, 277, 432
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	158, 270, 344
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	158, 270, 344
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	3 cut(s)	158, 270, 344
HaeIII	GGCC	4 cut(s)	114, 225, 301, 437
HapII	CCGG	3 cut(s)	53, 233, 359
Hin1II	CATG	3 cut(s)	82, 281, 436
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	3 cut(s)	53, 233, 359
HphI	GGTGA	3 cut(s)	42, 345, 370
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	412, 450, 468
Hpy188III	TCNNGA	1 cut(s)	33
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	3 cut(s)	78, 167, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 154, 298, 364
HpyF3I	CTNAG	2 cut(s)	306, 465
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	3 cut(s)	82, 281, 436
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	142, 207, 375, 412, 450
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	5 cut(s)	23, 255, 327, 388, 413
Lsp1109I	GCAGC	2 cut(s)	144, 355
LweI	GCATC	3 cut(s)	65, 176, 330
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	459
MalI	GATC	5 cut(s)	144, 209, 377, 414, 452
MboI	GATC	5 cut(s)	142, 207, 375, 412, 450
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	2 cut(s)	114, 437
MluNI	TGGCCA	2 cut(s)	114, 437
MnlI	CCTC	7 cut(s)	14, 113, 147, 196, 328, 357, 379
Mox20I	TGGCCA	2 cut(s)	114, 437
Mph1103I	ATGCAT	2 cut(s)	80, 169
MscI	TGGCCA	2 cut(s)	114, 437
MseI	TTAA	1 cut(s)	125
Msp20I	TGGCCA	2 cut(s)	114, 437
MspI	CCGG	3 cut(s)	53, 233, 359
MspR9I	CCNGG	2 cut(s)	254, 325
MvaI	CCWGG	2 cut(s)	254, 325
MwoI	GCNNNNNNNGC	4 cut(s)	111, 154, 298, 364
NdeII	GATC	5 cut(s)	142, 207, 375, 412, 450
NlaIII	CATG	3 cut(s)	82, 281, 436
NlaIV	GGNNCC	1 cut(s)	409
NmeAIII	GCCGAG	2 cut(s)	30, 348
NsiI	ATGCAT	2 cut(s)	80, 169
NspI	RCATGY	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	159, 271, 345
Ple19I	CGATCG	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	2 cut(s)	252, 323
PspGI	CCWGG	2 cut(s)	252, 323
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	2 cut(s)	223, 361
PsuI	RGATCY	1 cut(s)	450
PvuI	CGATCG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	393
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	3 cut(s)	158, 270, 344
Sau3AI	GATC	5 cut(s)	142, 207, 375, 412, 450
Sau96I	GGNCC	2 cut(s)	223, 361
ScrFI	CCNGG	2 cut(s)	254, 325
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	9 cut(s)	110, 150, 242, 252, 332, 369, 393, 462, 476
SfaNI	GCATC	3 cut(s)	65, 176, 330
SinI	GGWCC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SsiI	CCGC	3 cut(s)	103, 270, 356
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	252, 323
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	19
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	1 cut(s)	65
TseI	GCWGC	2 cut(s)	157, 343
TspDTI	ATGAA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	80, 169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.