Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001347

Physical Location & Seq

Genomic Coordinates Reverse (-)

15809380 .. 15809640

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGCTCTGCAACTCCAGGAAACACTGAAGGAGGCAATTTTAGTCTACACGGGCCTATCTCCAGCGACCTTCTTCACACTCCTGGCTCTGCTCTTTGCCACTTACCATGTCATTTATGAGCTTTTTGGACCGTCCGAGACCCACCACCGCCCCAGGAACTTGGAGGAGATGCAACCTCTGCCGCCACCAGTCCAGCTATGCGAGATCACCTCCAACGGCTCCAATACCAAGAAGCCTCTGCTCATGGCCATCAAGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0008150 GO:0008289 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0012505 GO:0016020 GO:0019904 GO:0020037 GO:0030308 GO:0031976 GO:0031984 GO:0034357 GO:0040008 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046906 GO:0048037 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0055035 GO:0065007 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

86

Amino Acids

9.65

Weight (kDa)

6.25

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001347)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0385041 RchiOBHm_Chr4g0407701 RchiOBHm_Chr5g0029901 RchiOBHm_Chr5g0055701 RchiOBHm_Chr6g0246331 RchiOBHm_Chr6g0302131 RchiOBHm_Chr7g0198091 RchiOBHm_Chr7g0241181
rosa_laevigata	RLG00000000642 RLG00000008699 RLG00000012164 RLG00000036633
rosa_multiflora	Rmu_co8060394.1_g000001 Rmu_sc0000159.1_g000053 Rmu_sc0001066.1_g000008 Rmu_sc0001921.1_g000006 Rmu_sc0003368.1_g000025 Rmu_sc0003430.1_g000019 Rmu_sc0013258.1_g000002 Rmu_sc0014150.1_g000010 Rmu_sc0026716.1_g000001 Rmu_sc0028287.1_g000001 Rmu_ssc0000160.1_g000012
rosa_roxburghii	Rroxscaffold_1G00005240 Rroxscaffold_2G00131430 Rroxscaffold_3G00219180 Rroxscaffold_5G00352320 Rroxscaffold_6G00393740
rosa_samantha	Rh1AG222100 Rh1BG014000 Rh2DG375900 Rh4AG123500 Rh4CG002600 Rh4CG002700 Rh4CG131500 Rh5AG342100 Rh5BG352700 Rh5BG525800 Rh5CG549400 Rh5DG211800 Rh5DG537800 Rh6AG424900 Rh6CG369200 Rh6DG177300 Rh6DG262000 Rh6DG333600 Rh7BG299900 Rh7BG388400 Rh7CG167900 Rh7CG510800 Rh7CG515200 Rh7DG308300
rosa_wichuraiana	Rw5G047230 Rw7G041640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	2 cut(s)	148, 182
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	47
AjnI	CCWGG	3 cut(s)	15, 81, 152
AluBI	AGCT	2 cut(s)	121, 196
AluI	AGCT	2 cut(s)	121, 196
Alw26I	GTCTC	1 cut(s)	131
AoxI	GGCC	2 cut(s)	52, 246
AspS9I	GGNCC	2 cut(s)	52, 128
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	248
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	3 cut(s)	17, 83, 154
BcoDI	GTCTC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	3 cut(s)	17, 83, 154
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	52, 128
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	3 cut(s)	17, 83, 154
BmsI	GCATC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	188
BseBI	CCWGG	3 cut(s)	17, 83, 154
BseDI	CCNNGG	1 cut(s)	152
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	54, 248
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	54, 248
Bso31I	GGTCTC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	148, 182
BspANI	GGCC	2 cut(s)	54, 248
BspLI	GGNNCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	3 cut(s)	17, 83, 154
Bst4CI	ACNGT	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	3 cut(s)	17, 83, 154
BstSCI	CCNGG	3 cut(s)	15, 81, 152
BstXI	CCANNNNNNTGG	1 cut(s)	160
BsuRI	GGCC	2 cut(s)	54, 248
BtsIMutI	CAGTG	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	52, 128
CviAII	CATG	2 cut(s)	107, 244
CviJI	RGCY	8 cut(s)	5, 54, 86, 121, 196, 219, 235, 248
CviKI_1	RGCY	8 cut(s)	5, 54, 86, 121, 196, 219, 235, 248
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	15, 81, 152
FaeI	CATG	2 cut(s)	110, 247
FaiI	YATR	4 cut(s)	108, 117, 199, 245
FatI	CATG	2 cut(s)	106, 243
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	54, 248
Hin1II	CATG	2 cut(s)	110, 247
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	22, 79
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	10, 172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	110, 247
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	9 cut(s)	2, 29, 68, 75, 95, 139, 166, 201, 206
LweI	GCATC	1 cut(s)	159
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	1 cut(s)	36
MluNI	TGGCCA	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	5 cut(s)	25, 157, 186, 220, 246
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	248
MspR9I	CCNGG	3 cut(s)	17, 83, 154
MvaI	CCWGG	3 cut(s)	17, 83, 154
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	2 cut(s)	110, 247
NlaIV	GGNNCC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	183
Psp6I	CCWGG	3 cut(s)	15, 81, 152
PspGI	CCWGG	3 cut(s)	15, 81, 152
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	52, 128
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	52, 128
ScrFI	CCNGG	3 cut(s)	17, 83, 154
SetI	ASST	5 cut(s)	71, 123, 178, 198, 212
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	128
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	148, 182
StyD4I	CCNGG	3 cut(s)	15, 81, 152
TaaI	ACNGT	1 cut(s)	132
TasI	AATT	1 cut(s)	36
TauI	GCSGC	1 cut(s)	184
TscAI	CASTG	1 cut(s)	30
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.